Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8100g00002 ATGAAAGGACAGGCTGATAAGAAGAGGAAAGAGGTATATTTTGAAGTGGGGGACTTGGTATTGGTTAAGTTACAACCATACCGTCAACATTCGGTGGTTTTGAGTAAGAATCATAAATTGGGGTTGCGTTTTTTTGGCCCATTTGAGATCATTCAGAAGATTGGTGATGTTGCATACAAATTGAAATTGCCTACCACTGCTAGAATTCATCCCGTATTTCATGTGTCTTTGTTGAAGAAGTTCCATGGCACTCCAGTTGAGCAATACTTGCCTTTGCCATTGACTACTTCAGAATTTGGACTGACCTTGCAACCTGAGAAGATTTTGGATTCGAGAGTAATTGTTCGTGGTGCTGAACAAATTCCTCAGGTGTTGGTTCAGTGGGAGTCAACCAAACCAGAATTGGCAACTTGGGAAGATGCTCTGCTTCTTCATCAATCTTATCCATCCCTCACCCTTGAGGACAAGGGTGTTTTAAAAGGGAAGGGTATTGTAACACGTGAGCTGCATGATGGGAGTGAACGACATGTTATTATGAATGAAAGACAGGTGGAACGTGATCAGGGACACGTGGAACTTGATCAGCATGAGGTGGAGAGCAGACGCAGCACTAGGATTCGTAAGGAAAATTCTCTTTTAAAAGGATTTGCGCATGGAAGAGCAAATGATTGGAAGTGGGTCCCGGATTTAGATGTTGTTACTCAAACATTGGAAGAGAAGTATCCTATCCCACCATTGGTGACCCCATCCGAAAAGACCATAGTGGGTTCAAAGATATTTTCTACATTTATTAGATTTCTGAAGAGCAAGGATCCCAATGACGGAACAGAACAAGCATTACTAAGTGAACTGAGCTCTTTCAATGATTACATAAAGGTAAATGGCACTTTCATAAACTGTAATGAGATATCTGGAGTTGACCCATCACTTGGACCAAAGTTATACTATTTGGAGATCGCTCTGGGGCATCATAAGAAATGGACAGTATCTGATCCACTTACCTCTTTGAAGACTTATACGAAGGTATATACTAAGGAAAACACCACCAACACTACTTTCCCTAAACTCAAGATCAAAGATGGAGGAACACCCTCTTCTTCTGGAGCTCCTTCTTCTTCACGCAACTCTTTCCCTCCCATAACACATAACACAGAAGATAGCGATGAAGATGTGTTCACTGTTCCAGATGTGGAAACTGCAGCAAGTGTAGATTGTGCAGGAAGAAATCCATGTAGCAGTAATGTTAATGAAAGTAACTCGACAGATCCACAGATACATTATCGTGGTTTCCCTGGAAAACGGCGTCAGGGAAGAAACCCTGTCGACAAAGAGCATAGACGCCACAAACGGTTGTTAAGGAACAGGGTTTCTGCTCAACAAGCTCGTGAAAGGAAAAAGGTTTACGTAAATGACTTGGAATTAAGAGCTGTGGAGTTGGAAGAGAAGAATACCAATTTAGAAGGGCAAATTTCAACGTTGATCAATGAAAACACCATGCTGCGAAAGGTTCTCATGAACACCAGGGCCAAAGTTGACCACAACAATGAAGCGTAG 1554 0.4196 MKGQADKKRKEVYFEVGDLVLVKLQPYRQHSVVLSKNHKLGLRFFGPFEIIQKIGDVAYKLKLPTTARIHPVFHVSLLKKFHGTPVEQYLPLPLTTSEFGLTLQPEKILDSRVIVRGAEQIPQVLVQWESTKPELATWEDALLLHQSYPSLTLEDKGVLKGKGIVTRELHDGSERHVIMNERQVERDQGHVELDQHEVESRRSTRIRKENSLLKGFAHGRANDWKWVPDLDVVTQTLEEKYPIPPLVTPSEKTIVGSKIFSTFIRFLKSKDPNDGTEQALLSELSSFNDYIKVNGTFINCNEISGVDPSLGPKLYYLEIALGHHKKWTVSDPLTSLKTYTKVYTKENTTNTTFPKLKIKDGGTPSSSGAPSSSRNSFPPITHNTEDSDEDVFTVPDVETAASVDCAGRNPCSSNVNESNSTDPQIHYRGFPGKRRQGRNPVDKEHRRHKRLLRNRVSAQQARERKKVYVNDLELRAVELEEKNTNLEGQISTLINENTMLRKVLMNTRAKVDHNNEA 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8100g00002 517 Pfam bZIP transcription factor 443 502 IPR004827 GO:0003700|GO:0006355
Vium8100g00002 517 Coils Coil 462 496 - -
Vium8100g00002 517 SMART brlzneu 442 506 IPR004827 GO:0003700|GO:0006355
Vium8100g00002 517 CDD bZIP_HY5-like 447 497 - -
Vium8100g00002 517 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 444 507 IPR004827 GO:0003700|GO:0006355
Vium8100g00002 517 SUPERFAMILY GST C-terminal domain-like 256 343 IPR036282 -
Vium8100g00002 517 MobiDBLite consensus disorder prediction 404 445 - -
Vium8100g00002 517 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 449 464 IPR004827 GO:0003700|GO:0006355
Vium8100g00002 517 Gene3D Single helix bin 465 506 - -
Vium8100g00002 517 PANTHER GLUTATHIONE S-TRANSFERASE DHAR2-RELATED 223 350 IPR044627 GO:0033355|GO:0045174|GO:0098869
Vium8100g00002 517 SUPERFAMILY Leucine zipper domain 446 505 IPR046347 GO:0003700|GO:0006355
Vium8100g00002 517 MobiDBLite consensus disorder prediction 364 382 - -
Vium8100g00002 517 Gene3D - 247 363 - -
Vium8100g00002 517 SUPERFAMILY Chromo domain-like 67 146 IPR016197 -
Vium8100g00002 517 MobiDBLite consensus disorder prediction 352 389 - -
Vium8100g00002 517 MobiDBLite consensus disorder prediction 406 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8100g00002 Vium-Chr8100 18970 43776 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8100g00002 223 351 Glutathione S-transferase Gene Family AT5G16710 64.615 2.61e-50 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vium8100g00002 bZIP_1 1.3e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8100g00002 K21888 - lja:Lj5g3v0747230.1 209.149