Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium80g00002 ATGGATGCTAAGTCTGCTGTAGAATTAATGGAGTCTTCTAACGAGGTTCATTTTTCTGGATTTCACATGGATGGTTTTGAGCAAAGAAAGGACAGCATAGAACAACCAACAACCTCGGAATCTGACATGTATAAACAACCTTTTGTCATAGGTGTTGCTGGGGGTGCAGCATCTGGCAAGACAGCAGTTTGTGATATGATCATTCAACAGCTTCATGATCAACGAGTTGTACTTGTTAATCAGGTATTGAATTATTTCTGTTTATACTTCTCAATTATCAAATTGAAAAAATATATTAAAGTGATCATTGAAAACAAACAATTGATTGGTTTCTACATCAGGCCCTATATGCATCCTGTTCTATCCATGATCTGA 375 0.3627 MDAKSAVELMESSNEVHFSGFHMDGFEQRKDSIEQPTTSESDMYKQPFVIGVAGGAASGKTAVCDMIIQQLHDQRVVLVNQVLNYFCLYFSIIKLKKYIKVIIENKQLIGFYIRPYMHPVLSMI 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium80g00002 124 Gene3D - 6 81 IPR027417 -
Vium80g00002 124 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 35 86 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium80g00002 Vium-Chr80 17378 18607 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium80g00002 1 80 PRT Gene Family AT4G26510 56.098 8.50e-27 101
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium80g00002 K00876 - vum:124837885 246.128