LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vium80g00001	ATGTATAAACAACCTTTTGTCATAGGTGTTGCTGGGGGTGCAGCATCTGGCAAGACAGCAGTTTGTGATATGATCATTCAACAGCTTCATGATCAACGAGTTGTACTTGTTAATCAGGATTCCTTTTACCATAGCTTGTCTGAGGAGGAACTTACACGAGTACAGGATTTCAACTTTGACCACCCTGATGCTTTTGATACTGAGCAATTGCTGTGCGTTATGGACAAGTTGAAGCATGGTGAAGCAGTAGATATTCCGAAGTATGATTTTAAGACTTACAAGAGTGATGTGTTAAGAAGGGTGAACCCTTCAGATGTCATAATTTTAGAAGGCATCCTTGCTTTCCATGATCCACGTGTTCGGGAGTTGATGAATATGAAGATATTTGTTGACACAGATGCTGATGTTCGATTGGCAAGAAGGATTAGGCGTGATACTAATGAAAAGAGTCGGGATATTGGAGCAGTTCTTGATCAGTATTCAAAATTTGTGAAGCCAGCTTTTGATGACTTTATTCTTCCAACAAAGAAGTATGCTGATATAATTATACCCCGTGGAGGAGATAATCATGTGGCCATTGATTTGATTGTACAGCATATTCGCACAAAGCTAGGTCAACATGACCTGTGTAAAATATATCCAAATTTATATGTCATTCAATCAACTTTTCAGATACGGGGTATGCATACGCTGATACGTGATTCTCAAACAACAAAGCATGATTTTATATTTTACTCTGATCGGTTGATTCGATTGGTTGTTGAACATGGTTTGGGGCATCTGCCATTTACAGAAAAACAAGTAGTCACTCCCACTGGTTCAGTATACACTGGTGTTGATTTTTGTAAAAGGCTGTGCGGTGTCTCTGTAATCAGAAGTGGGGAGAGCATGGAGAATGCTTTGAGGGCATGCTGCAAAGGTATCAAGATTGGTAAAATTCTAATTCACAGGGAAGGCGACAACGGTCAGCAGCTAATATATGAAAAGTTGCCAAATGATATCTCAGACAGGCATGTGTTACTGTTGGACCCTATACTTGGCACAGGTAATTCTGCTGTTCAAGCAATTTCTTTACTCATAAGAAAAGGTGTTCCTGAATCCAACATTATATTTCTTAATCTCATATCTGCTCCTAAAGGTGTGCATGTTGTATGCAAAAGTTTTCCAAGAATAAAGATAGTAACATCTGAGATTGAAATCGGTTTGAATGAAGATTTCCGTGTCATACCTGGCATGGGGGAGTTTGGAGATAGGTACTTTGGAACAGATGATGATGATGAACAAACGGTGGTTTCTTCACAGTAG	1305	0.3939	MYKQPFVIGVAGGAASGKTAVCDMIIQQLHDQRVVLVNQDSFYHSLSEEELTRVQDFNFDHPDAFDTEQLLCVMDKLKHGEAVDIPKYDFKTYKSDVLRRVNPSDVIILEGILAFHDPRVRELMNMKIFVDTDADVRLARRIRRDTNEKSRDIGAVLDQYSKFVKPAFDDFILPTKKYADIIIPRGGDNHVAIDLIVQHIRTKLGQHDLCKIYPNLYVIQSTFQIRGMHTLIRDSQTTKHDFIFYSDRLIRLVVEHGLGHLPFTEKQVVTPTGSVYTGVDFCKRLCGVSVIRSGESMENALRACCKGIKIGKILIHREGDNGQQLIYEKLPNDISDRHVLLLDPILGTGNSAVQAISLLIRKGVPESNIIFLNLISAPKGVHVVCKSFPRIKIVTSEIEIGLNEDFRVIPGMGEFGDRYFGTDDDDEQTVVSSQ	434

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vium80g00001	434	CDD	PRTases_typeI	280	395	IPR000836	-
	Vium80g00001	434	Gene3D	-	207	422	IPR029057	-
	Vium80g00001	434	FunFam	Uridine kinase	2	206	-	-
	Vium80g00001	434	PRINTS	Uridine kinase signature	135	145	-	-
	Vium80g00001	434	PRINTS	Uridine kinase signature	35	46	-	-
	Vium80g00001	434	PRINTS	Uridine kinase signature	5	22	-	-
	Vium80g00001	434	PRINTS	Uridine kinase signature	171	184	-	-
	Vium80g00001	434	PRINTS	Uridine kinase signature	80	95	-	-
	Vium80g00001	434	PRINTS	Uridine kinase signature	149	160	-	-
	Vium80g00001	434	FunFam	Uridine kinase	207	422	-	-
	Vium80g00001	434	NCBIfam	uridine kinase	4	203	IPR000764	-
	Vium80g00001	434	PANTHER	URIDINE KINASE	5	332	-	-
	Vium80g00001	434	SUPERFAMILY	PRTase-like	206	423	IPR029057	-
	Vium80g00001	434	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	2	196	IPR027417	-
	Vium80g00001	434	Pfam	Uracil phosphoribosyltransferase	221	422	-	-
	Vium80g00001	434	Pfam	Phosphoribulokinase / Uridine kinase family	7	191	IPR006083	GO:0005524\|GO:0016301
	Vium80g00001	434	CDD	UMPK	7	203	IPR000764	-
	Vium80g00001	434	Gene3D	-	2	206	IPR027417	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vium80g00001	Vium-Chr80	2584	8434	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vium80g00001	3	425	PRT Gene Family	AT4G26510	89.125	0.0	786

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vium80g00001	K00876		-	gmx:100527893	831.632