Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8096g00003 ATGTTATTTGTTTGTTTGTTATTATTATCTTGCTTGTCTAGAATTTCCAATTCACTAGATAGTTTAGCAGTAAGTGAATCAATCCAAGATGATAACACTTTGGTTTCTGCAAATGGAATCACTGAAGTGGGTTTCTTTAGCCCAGGAAATTCAACAAGACGATACTTGGGTATATGGTACAAAAATGTATCCCCTTTCACAGTGGTGTGGGTGGCAAACCGAAACACGCCTCTTCAGAATAAATCAGGAGTTCTCAAACTCAATGAAAAAGGGATTCTTATTCTTCTCAATGCTACAAACCACACCATTTGGTCATCATCCAACATCTCAAGCAAAGCAGGGAATAATCCAATTGCTCAGCTCTTGGATTCGGGAAATTTTGTAGTTAAAAAGGGACCAGAAGCCAACGATGATGGCGTCTTGTGGCAGAGTTTTGATCATCCAAGTGATACATTTATGCCAGGAATGAAAATTGGATGGAACTTAGAGACTGATTTGGAAACGTTTTTATCTTCTTGGAAAAGCTTTGATGATCCTGCTGTTGGAGAATATGCTCTGAAAATGAATCTTAGTGGATATCCTCAAATGATGAAGTTCAAGGGACCTGATATAGTGTTTAGAGGAGGATCATGGAATGGTTTGTCTCTAGTGGGAAATCCAGGTCCGACCTACGGCACGTCACCAAGATTCGTGCTCAATGAAAAAGAAGCGTATTACGAATACGGGATTGAGGAGAGTTCGGGGTTTATCATATATACATTGACGCCTTCAGGCACAGGAGAAATATTGTTTTGGACAACTCAAGCAAGAACACAGCAAGTTCTATCAAGTGGAGAGCAAGATCAATGCGAGAATTATGCCTTTTGTGGTGCAAATTCTATATGCAATTATGATGGTAACCACCCAAGTTGCGAATGCCTGAGAGGTTATGTTCCCAAGTCTCCAGATCAGTGGAATATATCAATTTGGCTCAGTGGTTGTGTTCCAAGGAATAAATCTAATTGCACAAATAGTTACACAGATGGCTTCTGGAAGTATACAAACATGAAATTGCCAGACACTTCTTCATCATGGTTTGATGAGACTATTAGTCTTGATGAATGTCAGCAGTCATGCCTTATGAACTGTTCTTGTACAGGTTATTCAAGTCTAAATGTTCTTGATGGAGGTAGTGGCTGTCTACTTTGGTTCGATGATCTAGTTGACATGAGGAATTTCTCAAAATGGGGACAAGACTTCTATATCAGAGTCCCTGCTTCAGAATTAGATCACGGAAACGACAAGAAAAACATTGTAGGAATCATTGTTGGTGTGACTATTTTTGGATTAATCATGACATGTGTATGCATACTGGGAATTAAAAATCCAGAGGCTGCAAGAAAATTTTGCAACAAGCATTACAAAAATATGCAGAGGAGGGAAGTGATAGATTTGCCAACTTTCGATTTCTCAGTCTTAGCCAGTGCCACTGGAAACTTTTCAACCGAAAACAAGCTTGGAGAAGGGGGTTTTGGACCAGTATACAAGGGCACACTGATGGATGGGAAAGAGTTAGCTGTGAAAAGGCTTTCTCAGAAATCTTTGCAAGGGTTGGATGAGTTCAAAAATGAAGTTGCATTGATGGCCAACCTTCAGCATCGTAATCTGGTAAAGCTTCTTGGTTGCTGCATTGAAGGAGAAGAAAAAATGCTAATATACGAGTACATGCCGAACCACAGCTTGGACTACGTTGTTTTTGATGAAGGTAAAAGGAAGTTCTTAGATTGGCGTAAGCGTTTCAACATCATTAGTGGCATTGCTCGAGGACTCCTTTATCTTCACCAAGACTCTACATTGAGGATTATTCATAGAGATCTAAAACCTAGTAATGTTTTACTAGATGCGAATTTGGATCCCAAAATATCAGACTTTGGCTTGGCTCGATTGGTTTTGGGAGATCAAGTTGAGGCAAAAACTAATAGGGTGGCAGGAACATATGGCTACATACCTCCTGAATATGCTGTGCGTGGGCATTTCTCAGTGAAATCAGATGTCTTTAGTTATGGTGTCATTGTACTAGAGGTTCTATGTGGTAAGAAAAACAGAGAATTTTCGGACCCAGAACACTGCAACAATCTTCTTGGGCATGCATGGAAATTATGGAGCGAAGACAGGGCACTGGAACTAGTACTAGATGAAGTGTTAGAAGAAGAGTGCACGGTGTTTGAAGTTATAAGATGCATACAAGTAGGTCTATTATGTGTACAACAAAGACCAGAGGATAGGCCAGACATGTCATCTGTGGTTTTAATGTTAAATGGCGATAAATTATTGCCAAACCCAAAGGCTCCTGCATTTTACACTGAAATTGATGATGTTAGCAAAGCAAATTCTCCATCAGCAAATCGCAAACCGTTCTCAGATAATGAACTTTCCATCACAGTGTTAAACCCAAGATAG 2439 0.3973 MLFVCLLLLSCLSRISNSLDSLAVSESIQDDNTLVSANGITEVGFFSPGNSTRRYLGIWYKNVSPFTVVWVANRNTPLQNKSGVLKLNEKGILILLNATNHTIWSSSNISSKAGNNPIAQLLDSGNFVVKKGPEANDDGVLWQSFDHPSDTFMPGMKIGWNLETDLETFLSSWKSFDDPAVGEYALKMNLSGYPQMMKFKGPDIVFRGGSWNGLSLVGNPGPTYGTSPRFVLNEKEAYYEYGIEESSGFIIYTLTPSGTGEILFWTTQARTQQVLSSGEQDQCENYAFCGANSICNYDGNHPSCECLRGYVPKSPDQWNISIWLSGCVPRNKSNCTNSYTDGFWKYTNMKLPDTSSSWFDETISLDECQQSCLMNCSCTGYSSLNVLDGGSGCLLWFDDLVDMRNFSKWGQDFYIRVPASELDHGNDKKNIVGIIVGVTIFGLIMTCVCILGIKNPEAARKFCNKHYKNMQRREVIDLPTFDFSVLASATGNFSTENKLGEGGFGPVYKGTLMDGKELAVKRLSQKSLQGLDEFKNEVALMANLQHRNLVKLLGCCIEGEEKMLIYEYMPNHSLDYVVFDEGKRKFLDWRKRFNIISGIARGLLYLHQDSTLRIIHRDLKPSNVLLDANLDPKISDFGLARLVLGDQVEAKTNRVAGTYGYIPPEYAVRGHFSVKSDVFSYGVIVLEVLCGKKNREFSDPEHCNNLLGHAWKLWSEDRALELVLDEVLEEECTVFEVIRCIQVGLLCVQQRPEDRPDMSSVVLMLNGDKLLPNPKAPAFYTEIDDVSKANSPSANRKPFSDNELSITVLNPR 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8096g00003 812 Gene3D - 13 145 IPR036426 -
Vium8096g00003 812 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 4 752 - -
Vium8096g00003 812 SMART ntp_6 338 417 IPR003609 -
Vium8096g00003 812 Pfam PAN-like domain 335 403 IPR003609 -
Vium8096g00003 812 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 14 145 - -
Vium8096g00003 812 ProSitePatterns Serine/Threonine protein kinases active-site signature. 614 626 IPR008271 GO:0004672|GO:0006468
Vium8096g00003 812 CDD B_lectin 25 148 IPR001480 -
Vium8096g00003 812 Gene3D Transferase(Phosphotransferase) domain 1 569 772 - -
Vium8096g00003 812 CDD PAN_AP_plant 332 418 - -
Vium8096g00003 812 ProSiteProfiles Bulb-type lectin domain profile. 19 142 IPR001480 -
Vium8096g00003 812 ProSiteProfiles PAN/Apple domain profile. 335 418 IPR003609 -
Vium8096g00003 812 SMART blect_4 25 148 IPR001480 -
Vium8096g00003 812 Pfam Protein kinase domain 494 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8096g00003 812 CDD STKc_IRAK 499 767 - -
Vium8096g00003 812 Gene3D Phosphorylase Kinase; domain 1 455 568 - -
Vium8096g00003 812 Gene3D Hepatocyte Growth Factor 334 414 - -
Vium8096g00003 812 SMART serkin_6 493 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8096g00003 812 Pfam S-locus glycoprotein domain 206 314 IPR000858 GO:0048544
Vium8096g00003 812 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 457 568 - -
Vium8096g00003 812 SUPERFAMILY Protein kinase-like (PK-like) 475 765 IPR011009 -
Vium8096g00003 812 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 334 417 - -
Vium8096g00003 812 PIRSF SRK 1 812 IPR024171 GO:0004674
Vium8096g00003 812 FunFam - 569 774 - -
Vium8096g00003 812 ProSiteProfiles EGF-like domain profile. 279 316 IPR000742 -
Vium8096g00003 812 Pfam D-mannose binding lectin 67 174 IPR001480 -
Vium8096g00003 812 ProSiteProfiles Protein kinase domain profile. 493 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8096g00003 812 SUPERFAMILY alpha-D-mannose-specific plant lectins 68 179 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8096g00003 Vium-Chr8096 37096 40229 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8096g00003 429 812 Receptor kinase-like Gene Family AT4G05200 48.622 1.28e-118 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium8096g00003 Pkinase 1.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8096g00003 - - gmx:100815430 1260.36