Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8096g00002 ATGGACATTTATGTTTTCATGCTTATGGTTGCATGCATATTTGTCCCTTCTCTCAAAACTTCCATAGCAATAAGTTCTATCGAAGTGTCCCAAACCATGACTGATGGAGAGACTTTGGTGTCAAATGGTGGAAAGTATGAACTTGGGTTCTTCAGCCCAGGTAATTCTATTAAACGTTACCTGGGCCTTTGGTACAAGAATATCCCAGTTCAGAAAGTCGTTTGGGTTGCTAATAGGGCCAACCCCATCAATGATTCCTCGGGTATCTTAACACTCAACACCACTGGCTATCTTGTTCTCACCCAAAATGGGTTTCTTGTTTGGTGTACTGACTCTCACAAACAAGCAGAGAATCCGGTGGCAGAACTCTTGGAAAGTGGGAATCTTGTGATAAGAAATAAGGGAGAAACAAACAAAGAAGAATATTTATGGCAAAGCTTTGACTATCCATCTGATACACTCTTGGCAGGGATGAAGTTAGGATGGGACCTCCGAACTGGTTTCGAATGGAAATATACTTGTTGGAAGAGTTCAGACGATCCATCCCCAGGAGACTTTTCTCGGGTTTTAAAACTCTATAACTATCCAGAGATTTATATAATGAATGGAACACAAAAATGGTTCAGATTTGGACCTTGGAACGGCCTATATTTTAGTGGAACACCAAGTCTATTTAACAACACCGTTTTCTATTTCAATATGGTCATCAATATGAATGAGATTTACTACTCATATAGCCTTTCAAATAGTGAAACCATCTCATTTACAGTAACAAACGAAACGGGTCAAGCGTATCGCTATGTGTGGACTGAGGATGATCACAAGTGGAGGACGATTGGATACTACCCGAGTGAGTTTTGTGACAATTACGGGCTCTGTGGACCCTATGGGAACTGCGTGAGAACCCAAACCCAAGTCTGTCAATGTTTGAAAGGTTTCAAACCAAAGGAGCCAAAAAAGTGGAACTTGTCTGATTGGCGTGGAGGTTGTGTCCGTAATGAACCGTTGAGTTGCAGAGGTAAAGACGAAGATGGGTTTAACAAATTTGAAGGGCTGAAAGTTCCGGATACTACACAAACATGGTTGGATGTGAGTTTCGGTCTTGAGGAATGCAGCATGAAGTGTTTGAGTAATTGTTCTTGCATGGCCTATTCTAATTCAGACATAAGAGGTGCAGGCAGTGGATGTGTCATGTGGTTCGGAGATCTCATTGATATGAAACAGTTTGAAACTGGAGGACAAGATCTATATATCAGGATGCCTGCTTCAGAGTTAGAACATGTTTATAGCCACAATAAGATCAAAACGCTTCCAATAGTTGTTTCCACCGTTGCAGCAGGTTGTGTTGTTCTATTATGCTCCTATTTATTCTGCAGAATCCGCAGGAACAAATCTGAGAAATCATTGGAAGAAGAACTCCGTGAAAAACAAGTGGATGATCTTGACGTCCAATTGTTCGATCTATTTACAATTGCAACTGCCACTAACAACTTCTCAATAGAAAATAAGATTGGACAAGGTGGTTTTGGACCTGTGTACAAGGGAGTATTACTTGATATGCAAGAAATTGCTGTAAAGACTCTATCAAGGAGCTCATGGCAAGGAGCGACAGAGTTCATAAACGAAGTCAAATTGATTGCAAAACTTCAGCACCGAAATCTCGTAAAACTTCTTGGTTGCTGCATTCAGGGACAAGAAAAAATGTTAGTTTATGAATACATGGCAAATGGCAGCCTAGATTCCTTCATATTTGATTATTTAAAAAGTAATTTGCTAGATTGGTCTCAACGCTTTCAAATTATATGTGGCATTGGAAGGGGGCTTCTGTATCTTCATCAAGATTCCCGATTAAGGATTATTCATAGAGATCTTAAAGCAAGCAACGTACTTCTTGATGAAAATTTGTGCCCAAAAATATCGGATTTTGGATTGGCCAGAATTTTTGGAGGAGACCAGATTGAAGGAAACACAAGAAGAGTAGTTGGGACGTATGGGTATATGGCACCAGAGTATGCCGTCGATGGATTATTTTCTGTGAAATCATATGTCTTCAGCTTTGGCATTTTACTGTTGGAAATTGTATGTGGAAAGAAAAATAGAGGACTTTATCACACAGACGAGAGTCTTAACCTAGTTGGTCATGCATGGACTTTATGGAAAACTGGGAGGGCATTAGAGTTGGTTGATTCGAGCATGAAGGAGTCATACATTTTAGCAGAAGTTCTGCGATGTCTCCATGTTAGTCTTTTGTGTGTGCAGCAATACCCAGAAGATAGGCCTACAATGGCGTCCGTGATTCTAATGTTGGAGACTCAAATGGAACTGGTTGAGCCCAAAGAACATGGTTTCACTTCAAGAAATGTTTTGGCTGAAGAAGATTTACGGTTAAATTCCAAAGACACGAGTTCAATCAACCATGTAACAATTACCTTGTTACAGGCGCGATAA 2448 0.4024 MDIYVFMLMVACIFVPSLKTSIAISSIEVSQTMTDGETLVSNGGKYELGFFSPGNSIKRYLGLWYKNIPVQKVVWVANRANPINDSSGILTLNTTGYLVLTQNGFLVWCTDSHKQAENPVAELLESGNLVIRNKGETNKEEYLWQSFDYPSDTLLAGMKLGWDLRTGFEWKYTCWKSSDDPSPGDFSRVLKLYNYPEIYIMNGTQKWFRFGPWNGLYFSGTPSLFNNTVFYFNMVINMNEIYYSYSLSNSETISFTVTNETGQAYRYVWTEDDHKWRTIGYYPSEFCDNYGLCGPYGNCVRTQTQVCQCLKGFKPKEPKKWNLSDWRGGCVRNEPLSCRGKDEDGFNKFEGLKVPDTTQTWLDVSFGLEECSMKCLSNCSCMAYSNSDIRGAGSGCVMWFGDLIDMKQFETGGQDLYIRMPASELEHVYSHNKIKTLPIVVSTVAAGCVVLLCSYLFCRIRRNKSEKSLEEELREKQVDDLDVQLFDLFTIATATNNFSIENKIGQGGFGPVYKGVLLDMQEIAVKTLSRSSWQGATEFINEVKLIAKLQHRNLVKLLGCCIQGQEKMLVYEYMANGSLDSFIFDYLKSNLLDWSQRFQIICGIGRGLLYLHQDSRLRIIHRDLKASNVLLDENLCPKISDFGLARIFGGDQIEGNTRRVVGTYGYMAPEYAVDGLFSVKSYVFSFGILLLEIVCGKKNRGLYHTDESLNLVGHAWTLWKTGRALELVDSSMKESYILAEVLRCLHVSLLCVQQYPEDRPTMASVILMLETQMELVEPKEHGFTSRNVLAEEDLRLNSKDTSSINHVTITLLQAR 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8096g00002 815 ProSiteProfiles Protein kinase domain profile. 498 784 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8096g00002 815 SUPERFAMILY Protein kinase-like (PK-like) 483 777 IPR011009 -
Vium8096g00002 815 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 12 760 - -
Vium8096g00002 815 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 20 147 - -
Vium8096g00002 815 PIRSF SRK 1 815 IPR024171 GO:0004674
Vium8096g00002 815 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 574 777 - -
Vium8096g00002 815 ProSitePatterns Serine/Threonine protein kinases active-site signature. 619 631 IPR008271 GO:0004672|GO:0006468
Vium8096g00002 815 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 461 573 - -
Vium8096g00002 815 Gene3D Phosphorylase Kinase; domain 1 458 573 - -
Vium8096g00002 815 ProSiteProfiles Bulb-type lectin domain profile. 24 144 IPR001480 -
Vium8096g00002 815 Pfam PAN-like domain 338 406 IPR003609 -
Vium8096g00002 815 SMART blect_4 30 150 IPR001480 -
Vium8096g00002 815 Pfam D-mannose binding lectin 73 176 IPR001480 -
Vium8096g00002 815 SMART serkin_6 498 776 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8096g00002 815 SMART ntp_6 341 420 IPR003609 -
Vium8096g00002 815 Gene3D Transferase(Phosphotransferase) domain 1 574 787 - -
Vium8096g00002 815 Pfam Protein tyrosine and serine/threonine kinase 499 766 IPR001245 GO:0004672|GO:0006468
Vium8096g00002 815 CDD PAN_AP_plant 335 421 - -
Vium8096g00002 815 Gene3D - 21 147 IPR036426 -
Vium8096g00002 815 CDD B_lectin 30 150 IPR001480 -
Vium8096g00002 815 Pfam S-locus glycoprotein domain 208 316 IPR000858 GO:0048544
Vium8096g00002 815 ProSiteProfiles PAN/Apple domain profile. 338 421 IPR003609 -
Vium8096g00002 815 SUPERFAMILY alpha-D-mannose-specific plant lectins 73 181 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8096g00002 Vium-Chr8096 28934 33713 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8096g00002 440 783 Receptor kinase-like Gene Family AT4G23230 53.623 3.00e-120 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium8096g00002 PK_Tyr_Ser-Thr 1.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8096g00002 - - gmx:100802962 1207.59