Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8096g00001 ATGGGTGTTATTCATGCTTTTGTGATTATATTTGCATGCATGCTTGTTCTCTCACTAGAAATTTCGGGAGCAAATGATTCAATCAACGTGGCCCAGTTTCTGAGGGATGGGAATACTTTGGTATCAAAAGGTGGAAAGTTTGAACTTGGATTCTTCACCCCTGGTAGTTCCCAGAAACGTTATCTGGGAATTTGGTACAAGAATATCCCAGTTACGACGTATGTTTGGGTTGCTAATGGGGCCAACCCTATCAATGATTCCTCAGGCATCTTAACAGTGAACACCACAGGCAATCTTGTTCTCACCCAAAATGGTTCTCTTGTTTGGCACTCCAACAACTCTCACAAACAAGCACAGAATCCGGTGGTAGAAATGTTGGACAGTGGCAATCTTGTGATAAGAAACGAGGGAGAAACAAACCCAGAAGAGTATTTGTGGCAAAGCTTTGATTATCCATCTGATACACTCTTGCCAGGGATGAAGTTAGGATGGGACCTCCGAACAGGTTTGGAACGGAAATATACAGCATGGAAGAGTCAAGATGATCCATCCCCAGGTGATGTATCTCGGGTTTTGAAACTCTATAACTATCCTGAGGTTTATATGATGAAGGGTACACAAAAGTTGCTGAGGTATGGACCATGGAATGGCGAATATTTTAGTGGAATGCCTGATCTACTGAATAACACCATTTTCGGCTTGAGTTTTGTCAGCAACGAAGATGAGATTTACTACACGTATACCCTCGTTAATGATTCTGTCCCCACCAGAACTGTTACAAACCAATCAGGTACTATTGTTCGTTATGTGTGGAAGGAGGATGAGAAAACATGGAAAACATACAGAACGTACCCGAAAGAGTCTTGCGACCATTATGACACCTGTGGACCTAACGGATTATGTGTACGAACTCAATCACAGCCTTGCAATTGTTTGAAAGGTTTCAGTCCAAAATCACCACAAAATTGGAACTCATCGGATTGGAAGGAAGGATGTGAGCGCAATAAAGCGTTGAATTGCAATAGTGATGTGTTTCTCATATTTAAAGGGCTGAAAGTTCCAGCCACTACAGATACTTGGTTGAATAAGAGTATTGATCTAAAGGAATGCAAAGTGAAGTGCTTGAAAGATTGTTCTTGCATGGCCTATACTAATTCAGATATCAGAAATGGAGGTAGTGGTTGTGTCTTGTGGTTTGGAGATCTCATTGACATGAAACAGATTGAAACTGGTGGACAAGACCTGTATATCAGGATGAATGCTTCGGAGGCAGACATGACTGTTTTTGTTTTTATAATCAATTCCAACACTCAAGAACCTGGACCGAGCAAGCACACACTAACGATAGTTGCTTCTACCGTTGCTGCAATTTGTGGTGTTCTTATACTTCTAAGTACGTATATTATTTTCAGGCTCCAGAGGAACAAAGCTGACTTAAGTAAAAGACATGTGGATGATCTGGATGTCCAACTGTTTGATCTAGTAACAATTGGAAAGGCGACTAATAACTTCTCCACAGAGAATATAATAGGAGAAGGTGGTTTTGGACATGTATACAAGGGCATAATTGACGGGAAAGAAATTGCTGTAAAGACTATGTCAAGAAGCTCATGGCAAGGTGTGACAGAGTTCATCAATGAAGTAAACTTGACTGCAAAACTTCAGCATCGGAATCTTATTAAACTTCTTGGTTGCTGCATTCGAGGAGAAGAAAGAATGCTCATTTATCAGTACATGGAAAATGGCAGCCTAGACTCCCTTATTTTTGATGATAAAAGAGGTAAATTTCTGGAGTGGCCTCAACGGTTCCAAATAATTTGCGGAATTGCAAGGGGCCTTGTGTACCTTCATCAAGATTCCCCACTGAGGATCATCCACAGGGATCTCAAAGCTAGTAACATCTTACTCGATAAATCGTTCAATCCGAAAATATCAGACTTTGGTGTGTCGAGATCTTTTGGAGTAGACCAATTTGAAGGAAGCACAAGTAGAGTAGTGGGGACCTGTGGGTATATGGCGCCAGAATATGCAGTTGATGGATTATTTTCTGAAAAATCTGACGTATTTAGCTTTGGAATTTTGGTGTTGGAGATTGTCTGTGGGAAGAGAAACAGAGGACTTTATCAGACAGATAAGAGTCTTAACCTTGTTGCTCATTCATGGACATTATGGAAAGCGGGCAAGGCAATAGATTTCATTGCCTCGAACATGAAGACATCATCGTGCGTTATGTCTGAAGTACTGCGTTGTCTCCATGTCGGTCTTTTGTGTGTGCAACAGTACCCAGATGATAGGCCTACAATGAAGTCTGTGATTCTAATGTTGGAGAGTCACATTGCACTGGCTGAGCCAAAAGAACCTGGTTTCCTTTCGAGAAATGTGTTACCTAAAGTTTTAGGCTCAAATATGAACGACACAAGTTCAACCAACGAAGTGACCATTACTCTGTTAGAACCTCGATGA 2463 0.4117 MGVIHAFVIIFACMLVLSLEISGANDSINVAQFLRDGNTLVSKGGKFELGFFTPGSSQKRYLGIWYKNIPVTTYVWVANGANPINDSSGILTVNTTGNLVLTQNGSLVWHSNNSHKQAQNPVVEMLDSGNLVIRNEGETNPEEYLWQSFDYPSDTLLPGMKLGWDLRTGLERKYTAWKSQDDPSPGDVSRVLKLYNYPEVYMMKGTQKLLRYGPWNGEYFSGMPDLLNNTIFGLSFVSNEDEIYYTYTLVNDSVPTRTVTNQSGTIVRYVWKEDEKTWKTYRTYPKESCDHYDTCGPNGLCVRTQSQPCNCLKGFSPKSPQNWNSSDWKEGCERNKALNCNSDVFLIFKGLKVPATTDTWLNKSIDLKECKVKCLKDCSCMAYTNSDIRNGGSGCVLWFGDLIDMKQIETGGQDLYIRMNASEADMTVFVFIINSNTQEPGPSKHTLTIVASTVAAICGVLILLSTYIIFRLQRNKADLSKRHVDDLDVQLFDLVTIGKATNNFSTENIIGEGGFGHVYKGIIDGKEIAVKTMSRSSWQGVTEFINEVNLTAKLQHRNLIKLLGCCIRGEERMLIYQYMENGSLDSLIFDDKRGKFLEWPQRFQIICGIARGLVYLHQDSPLRIIHRDLKASNILLDKSFNPKISDFGVSRSFGVDQFEGSTSRVVGTCGYMAPEYAVDGLFSEKSDVFSFGILVLEIVCGKRNRGLYQTDKSLNLVAHSWTLWKAGKAIDFIASNMKTSSCVMSEVLRCLHVGLLCVQQYPDDRPTMKSVILMLESHIALAEPKEPGFLSRNVLPKVLGSNMNDTSSTNEVTITLLEPR 820
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8096g00001 820 ProSitePatterns Serine/Threonine protein kinases active-site signature. 624 636 IPR008271 GO:0004672|GO:0006468
Vium8096g00001 820 Gene3D Transferase(Phosphotransferase) domain 1 579 786 - -
Vium8096g00001 820 PANTHER BULB-TYPE LECTIN DOMAIN-CONTAINING PROTEIN 9 766 - -
Vium8096g00001 820 Pfam D-mannose binding lectin 73 178 IPR001480 -
Vium8096g00001 820 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 579 783 - -
Vium8096g00001 820 ProSiteProfiles PAN/Apple domain profile. 340 421 IPR003609 -
Vium8096g00001 820 ProSiteProfiles Bulb-type lectin domain profile. 25 146 IPR001480 -
Vium8096g00001 820 SMART serkin_6 504 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8096g00001 820 CDD PAN_AP_plant 338 418 - -
Vium8096g00001 820 CDD STKc_IRAK 510 776 - -
Vium8096g00001 820 SMART ntp_6 340 419 IPR003609 -
Vium8096g00001 820 SUPERFAMILY Protein kinase-like (PK-like) 483 776 IPR011009 -
Vium8096g00001 820 Pfam S-locus glycoprotein domain 211 319 IPR000858 GO:0048544
Vium8096g00001 820 Gene3D Phosphorylase Kinase; domain 1 479 578 - -
Vium8096g00001 820 ProSitePatterns Protein kinases ATP-binding region signature. 510 531 IPR017441 GO:0005524
Vium8096g00001 820 ProSiteProfiles Protein kinase domain profile. 504 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8096g00001 820 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 21 149 - -
Vium8096g00001 820 CDD B_lectin 32 152 IPR001480 -
Vium8096g00001 820 SMART blect_4 31 152 IPR001480 -
Vium8096g00001 820 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 183 IPR036426 -
Vium8096g00001 820 PIRSF SRK 1 820 IPR024171 GO:0004674
Vium8096g00001 820 FunFam Os08g0179000 protein 474 578 - -
Vium8096g00001 820 Gene3D - 20 149 IPR036426 -
Vium8096g00001 820 Pfam Protein tyrosine and serine/threonine kinase 506 772 IPR001245 GO:0004672|GO:0006468
Vium8096g00001 820 Pfam PAN-like domain 340 405 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8096g00001 Vium-Chr8096 15735 19079 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8096g00001 405 789 Receptor kinase-like Gene Family AT4G23230 46.455 1.54e-112 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium8096g00001 PK_Tyr_Ser-Thr 2.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8096g00001 - - vra:106754325 1553.11