Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8094g00001 ATGGCCGCCACAACCAACGCCGCTGCCCCGCCGCGCCAGCTCTCTCAAAAGGAAGCCGACATCCAGATGATGTTGGCAGCCGACGTTCACCTCGGCACCAAAAATTGTGATTTTCAAATGGAGCGCTACATCTTCAAGCGCCGCAACGATGGTATTTATATTATCAACCTTGGTAAGACATGGGAGAAGCTTCAACTTGCTGCTAGGGTTATCGTTGCAATTGAGAACCCTCAGGATATTATTGTGCAATCTGCTCGGCCTTATGGTCAGAGAGCGGTTCTCAAGTTTGCCCAGTACACTGGTGCTCATGCCATTGCTGGAAGGCACACTCCTGGTACCTTTACCAATACTCAGTTCAAGAGTTAA 366 0.4973 MAATTNAAAPPRQLSQKEADIQMMLAADVHLGTKNCDFQMERYIFKRRNDGIYIINLGKTWEKLQLAARVIVAIENPQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNTQFKS 121
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8094g00001 121 Gene3D - 20 121 - -
Vium8094g00001 121 Pfam Ribosomal protein S2 24 118 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vium8094g00001 121 SUPERFAMILY Ribosomal protein S2 16 118 IPR023591 -
Vium8094g00001 121 CDD RPS2 24 121 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vium8094g00001 121 PRINTS Ribosomal protein S2 signature 21 39 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vium8094g00001 121 PRINTS Ribosomal protein S2 signature 51 60 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vium8094g00001 121 PRINTS Ribosomal protein S2 signature 100 117 IPR001865 GO:0003735|GO:0005840|GO:0006412
Vium8094g00001 121 PANTHER 40S RIBOSOMAL PROTEIN SA 11 118 IPR005707 GO:0003735|GO:0006412|GO:0015935
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8094g00001 Vium-Chr8094 6681 7254 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8094g00001 5 116 Cytoplasmic Ribosomal Protein Gene Family AT1G72370 86.607 1.26e-69 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8094g00001 K02998 - vum:124825230 238.424