Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium808g00003 ATGTTTTGTGATCACACATTACGGTGTCTGGCAATTGATGCTCCGAGGAACAAACAGGTTCATAGACAACGACTACCTCCGAATCTGTCACCTGATTCTAGTTCAGGCGGTGGTGTTGCTGCAGAGAAAGATTCGTTTTCTCACAAATTTGGTTGGAGATCTTCGAAAAAACTGCTTGGAACACCGATTAAGAAGTTATTAGACGAAGAGATGTCACCGAAATCTGAATCAAAAAGAAGATCCCCTGGAGTCATCGCCAGATTGATGGGTCTTGATGGACTGCCATTTCAGCAGCCTATTAATAAGCAGCAAAAGGGTTTATCTGAAAACCACCAGAAGACTCCACAATTGCAGAAAACACGCGGCAAAGGAGTGCCATATGACTGTGGATCATCTAGGAGAGGCTTAAGGGATCAACAAGAATTTAAGGATGTATTTGAGGTTTCTGAGATTCCAAAGGTAGAGAGCAGTAGATATCCGTCGCCAGGGTGTGTAGACTTGAAGACCAATGATGCTGAAATGTCATTCATTGAACAGAAGTTCATGGATGCCAAACGCCTTGCAACTCATCAAGATTTACAGTCTTCAAAGGACTTCCGAGACACACTTGAGGTTTTGGATTCTAACAAGGATCTTCTGCTGAAATACTTTAAGCGGCCAGATTCTTTGTTTAAAAAGCATCTAAATGATCTTCAAACTGTTCCGGTTCAATCACATTACAGACATGCAGAAACTATGGATATCGAGAAGTATGAAGATGACTTAAGTTGGAGGTCAGATAGGGAGAAAACACGGTTGAACTACAATAGATCTCATGAAAAGCATCTTGATGGTTATCCTTATCATTTTGACAAAAGACATGTGATGCATAGTTCACCAAAATCATCAAAGCTTCAATTTCAGGGCAGACATGAACAAGACGCAGTCCCCACAAAGATTGTCCTCCTGAAACCCAATCTTGGAAAAGTGCAGGGTACCAGAATTGCATCATCACCTTGTTCTCATAATTTTCTGTCGGGGCGTGAAGGAGACGGTGAACTGTGTCAAGTGACAAATTTGCCTGAAAGTGCAAGTTCTTGGAGGCAAGATTCTTTTGAATCTAGAGAAATTGCTAAGGAAATTACTAGGCAAATGAGAAATAGTCTTAACAATAGCGGCATGATGCTTTCAACTTCTAGAATTGCGGGATATGCTGGGGATGATAGTTCATGTAGTATTTCTGGTAATGAATCTCCTGACATATCTGGGGAAATAACTGCAACTTTGGGAAATTCATTCGACTTAAACAGCCGTAGCAGGCGATCATCCCATTCCGGTGAATCTTCTGTAAGTAGAGAGGCGAAGAAGAGATTGTCAGAGAGGTGGAAAATGACACACAAGTCTCAAGAGGTGGAGGGAATCAGCAGGAGTAGCACGCTGGCAGAAATGCTTTCTATCCCTGACAAAGACTTGAAGGCAGCAAATTTTGTTGGCACGGCTACTGGGGAAGGTTTCCATGATAAGTTTACTCCCAATAGCGAACCTGCTAAGTGGGTTGAACCATTGGGTATCAGCAGCAGGGATGGTTGGAAGGACGGCTGCATTGGTAGTTTGTCAAGGTCACAATCTCTTCCTTCTTCCTCCACTTCCTTTGGAAGTCCTAAAACATTCTTGCGCACTGAAGCACTTTGTTCTGATCGATATATGGTGCCGAAGGAAGGCCATAAACGTGAGAGGAGAAGAGCAGCAAAGAGTCTTGATCATAGACATGGTGTAAATAACAGAAGCCCAAGATCCGGTCACAAGAAGTCTTGGTCTTTGCATTCGTCAAAGCTAGAAGTAGATGAGTTTTGTGCTGACTTACATACAGTTCAGAATAAAATGAATATCATTCTTGAAGATTCGGCCAAGCTTGAAGTTCCAAGTGCAGTTGCTGATGATGACACGGAGGTGACAAATGGAAGCATAGTTGAGTCTTCTGAACCTTTGAATAAGGTGCTTCCTGAATTATCTTCTCATGTTGTGATTGAAGGCCATGGTGGTGCGGTTGGCAACAATTCAATACAGCAGGATCTATCAGCTGCGTCGCCTCATGGAAGTTCAGTCATCCATGAACCACCTGTTCCTGGACTTGAAACTTCTTGCTGTAAAGATGCTGATCAACCCAGCCCTGTCTCCATCCTAGAACCTGCTTTTACAGATGATCTGTCTTCTTGTTCTGAATGTTTTGAAAGTCTGAGTGCTGATCTACAAGGGCTGCGAATGCAACTCCAGTTGCTGAAGTTGGAATCTGATGACTATGCGGAGGGACCCATGACAGTAAGTGATGAAGAGGGTGAGGAAGTATCTGCGGGAATGTCAGCAGCAGACAAAGGATTATGTAGAACAACTGAAGATAGCTGGGAATGTTCTTACATTATGGATGTCTTGTCCGAATCTGGCATTGATGGAATTCAGCTCGATACAATTTTAGAAGTTTGGCATTCCCTAGAATGCCCTGTGAGTCTTTCGGTGTTTGATGAACTTGAAAAAAGGTATAGTGACGGGACAACTTGTTCAAGGTCTCAAAGGAGATTGCTTTTTGACCATATAAATATAGGAATTCTCAAGATCAGTAAGCAATTCTCTTTCTCTAGATCAGCAATAAAAAATGCCATTGGTTCTAATTTGACCAAAAACGGGTTCCGAGATGGCCTTCTGAGGATGGTAGTGAACGAAGCAACAGTAAGTGATGGTGGCCAGGGGAATGTAGTGGTTGGGGAATCTGAGTGGATGGACCTTAAAGTTTACACTGATGGAATAGCCAGGGAAGTTGAGAGATCATTGTTAGATGATTTGGTGGCAGAGGTAATCAGTACCTAG 2841 0.4277 MFCDHTLRCLAIDAPRNKQVHRQRLPPNLSPDSSSGGGVAAEKDSFSHKFGWRSSKKLLGTPIKKLLDEEMSPKSESKRRSPGVIARLMGLDGLPFQQPINKQQKGLSENHQKTPQLQKTRGKGVPYDCGSSRRGLRDQQEFKDVFEVSEIPKVESSRYPSPGCVDLKTNDAEMSFIEQKFMDAKRLATHQDLQSSKDFRDTLEVLDSNKDLLLKYFKRPDSLFKKHLNDLQTVPVQSHYRHAETMDIEKYEDDLSWRSDREKTRLNYNRSHEKHLDGYPYHFDKRHVMHSSPKSSKLQFQGRHEQDAVPTKIVLLKPNLGKVQGTRIASSPCSHNFLSGREGDGELCQVTNLPESASSWRQDSFESREIAKEITRQMRNSLNNSGMMLSTSRIAGYAGDDSSCSISGNESPDISGEITATLGNSFDLNSRSRRSSHSGESSVSREAKKRLSERWKMTHKSQEVEGISRSSTLAEMLSIPDKDLKAANFVGTATGEGFHDKFTPNSEPAKWVEPLGISSRDGWKDGCIGSLSRSQSLPSSSTSFGSPKTFLRTEALCSDRYMVPKEGHKRERRRAAKSLDHRHGVNNRSPRSGHKKSWSLHSSKLEVDEFCADLHTVQNKMNIILEDSAKLEVPSAVADDDTEVTNGSIVESSEPLNKVLPELSSHVVIEGHGGAVGNNSIQQDLSAASPHGSSVIHEPPVPGLETSCCKDADQPSPVSILEPAFTDDLSSCSECFESLSADLQGLRMQLQLLKLESDDYAEGPMTVSDEEGEEVSAGMSAADKGLCRTTEDSWECSYIMDVLSESGIDGIQLDTILEVWHSLECPVSLSVFDELEKRYSDGTTCSRSQRRLLFDHINIGILKISKQFSFSRSAIKNAIGSNLTKNGFRDGLLRMVVNEATVSDGGQGNVVVGESEWMDLKVYTDGIAREVERSLLDDLVAEVIST 946
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium808g00003 946 MobiDBLite consensus disorder prediction 103 119 - -
Vium808g00003 946 Pfam Protein of unknown function (DUF3741) 178 222 IPR022212 -
Vium808g00003 946 MobiDBLite consensus disorder prediction 20 42 - -
Vium808g00003 946 MobiDBLite consensus disorder prediction 427 457 - -
Vium808g00003 946 MobiDBLite consensus disorder prediction 103 133 - -
Vium808g00003 946 MobiDBLite consensus disorder prediction 565 599 - -
Vium808g00003 946 PANTHER AFADIN 18 945 - -
Vium808g00003 946 Coils Coil 736 756 - -
Vium808g00003 946 Pfam Domain of unknown function (DUF4378) 796 942 IPR025486 -
Vium808g00003 946 MobiDBLite consensus disorder prediction 438 457 - -
Vium808g00003 946 Pfam DUF761-associated sequence motif 75 95 IPR032795 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium808g00003 Vium-Chr808 20076 24984 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium808g00003 60 944 TRM (TON1 Recruiting Motif) Superfamily AT3G53540 35.746 1.28e-128 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium808g00003 - - ccaj:109788117 1305.43