Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium808g00002 ATGGACAAATTCCGCCGCAGCAACTCCAACCACCAACCTTCTCTTACTCAAGCTCCGAGGAACAAACAGGTTCATAGACAACGACTACCTCCGAATCTGTCACCTGATTCTAGTTCAGGCGGTGGTGTTGCTGCAGAGAAAGATTCGTTTTCTCACAAATTTGGTTGGAGATCTTCGAAAAAACTGCTTGGAACACCGATTAAGAAGTTATTAGACGAAGAGATGTCACCGAAATCTGAATCAAAAAGAAGATCCCCTGGAGTCATCGCCAGATTGATGGGTCTTGATGGACTGCCATTTCAGCAGCCTATTAATAAGCAGCAAAAGGGTTTATCTGAAAACCACCAGAAGACTCCACAATTGCAGAAAACACGCGGCAAAGGAGTGCCATATGACTGTGGATCATCTAGGAGAGGCTTAAGGGATCAACAAGAATTTAAGGATGTATTTGAGGTTTCTGAGATTCCAAAGGTAGAGAGCAGTAGATATCCGTCGCCAGGGTGTGTAGACTTGAAGACCAATGATGCTGAAATGTCATTCATTGAACAGAAGTTCATGGATGCCAAACGCCTTGCAACTCATCAAGATTTACAGTCTTCAAAGGACTTCCGAGACACACTTGAGGTTTTGGATTCTAACAAGGATCTTCTGCTGAAATACTTTAAGCGGCCAGATTCTTTGTTTAAAAAGCATCTAAATGATCTTCAAACTGTTCCGGTTCAATCACATTACAGACATGCAGAAACTATGGATATCGAGAAGTATGAAGATGACTTAAGTTGGAGGTCAGATAGGGAGAAAACACGGTTGAACTACAATAGATCTCATGAAAAGCATCTTGATGGTTATCCTTATCATTTTGACAAAAGACATGTGATGCATAGTTCACCAAAATCATCAAAGCTTCAATTTCAGGGCAGACATGAACAAGACGCAGTCCCCACAAAGATTGTCCTCCTGAAACCCAATCTTGGAAAAGTGCAGGGTACCAGAATTGCATCATCACCTTGTTCTCATAATTTTCTGTCGGGGCGTGAAGGAGACGGTGAACTGTGTCAAGTGACAAATTTGCCTGAAAGTGCAAGTTCTTGGAGGCAAGATTCTTTTGAATCTAGAGAAATTGCTAAGGAAATTACTAGGCAAATGAGAAATAGTCTTAACAATAGCGGCATGATGCTTTCAACTTCTAGAATTGCGGGATATGCTGGGGATGATAGTTCATGTAGTATTTCTGGTAATGAATCTCCTGACATATCTGGGGAAATAACTGCAACTTTGGGAAATTCATTCGACTTAAACAGCCGTAGCAGGCGATCATCCCATTCCGGTGAATCTTCTGTAAGTAGAGAGGCGAAGAAGAGATTGTCAGAGAGGTGGAAAATGACACACAAGTCTCAAGAGGTGGAGGGAATCAGCAGGAGTAGCACGCTGGCAGAAATGCTTTCTATCCCTGACAAAGACTTGAAGGCAGCAAATTTTGTTGGCACGGCTACTGGGGAAGGTTTCCATGATAAGTTTACTCCCAATAGCGAACCTGCTAAGTGGGTTGAACCATTGGGTATCAGCAGCAGGGATGGTTGGAAGGACGGCTGCATTGGTAGTTTGTCAAGGTCACAATCTCTTCCTTCTTCCTCCACTTCCTTTGGAAGTCCTAAAACATTCTTGCGCACTGAAGCACTTTGTTCTGATCGATATATGGTGCCGAAGGAAGGCCATAAACGTGAGAGGAGAAGAGCAGCAAAGAGTCTTGATCATAGACATGGTGTAAATAACAGAAGCCCAAGATCCGGTCACAAGAAGTCTTGGTCTTTGCATTCGTCAAAGCTAGAAGTAGATGAGTTTTGTGCTGACTTACATACAGTTCAGAATAAAATGAATATCATTCTTGAAGATTCGGCCAAGCTTGAAGTTCCAAGTGCAGTTGCTGATGATGACACGGAGGTGACAAATGGAAGCATAGTTGAGTCTTCTGAACCTTTGAATAAGGTGCTTCCTGAATTATCTTCTCATGTTGTGATTGAAGGCCATGGTGGTGCGGTTGGCAACAATTCAATACAGCAGGATCTATCAGCTGCGTCGCCTCATGGAAGTTCAGTCATCCATGAACCACCTGTTCCTGGACTTGAAACTTCTTGCTGTAAAGATGCTGATCAACCCAGCCCTGTCTCCATCCTAGAACCTGCTTTTACAGATGATCTGTCTTCTTGTTCTGAATGTTTTGAAAGTCTGAGTGCTGATCTACAAGGGCTGCGAATGCAACTCCAGTTGCTGAAGTTGGAATCTGATGACTATGCGGAGGGACCCATGACAGTAAGTGATGAAGAGGGTGAGGAAGTATCTGCGGGAATGTCAGCAGCAGACAAAGGATTATGTAGAACAACTGAAGATAGCTGGGAATGTTCTTACATTATGGATGTCTTGTCCGAATCTGGCATTGATGGAATTCAGCTCGATACAATTTTAGAAGTTTGGCATTCCCTAGAATGCCCTGTGAGTCTTTCGGTGTTTGATGAACTTGAAAAAAGGTATAGTGACGGGACAACTTGTTCAAGGTCTCAAAGGAGATTGCTTTTTGACCATATAAATATAGGAATTCTCAAGATCAGTAAGCAATTCTCTTTCTCTAGATCAGCAATAAAAAATGCCATTGGTTCTAATTTGACCAAAAACGGGTTCCGAGATGGCCTTCTGAGGATGGTAGTGAACGAAGCAACAGTAAGTGATGGTGGCCAGGGGAATGTAGTGGTTGGGGAATCTGAGTGGATGGACCTTAAAGTTTACACTGATGGAATAGCCAGGGAAGTTGAGAGATCATTGTTAGATGATTTGGTGGCAGAGGTAATCAGTACCTAG 2853 0.4294 MDKFRRSNSNHQPSLTQAPRNKQVHRQRLPPNLSPDSSSGGGVAAEKDSFSHKFGWRSSKKLLGTPIKKLLDEEMSPKSESKRRSPGVIARLMGLDGLPFQQPINKQQKGLSENHQKTPQLQKTRGKGVPYDCGSSRRGLRDQQEFKDVFEVSEIPKVESSRYPSPGCVDLKTNDAEMSFIEQKFMDAKRLATHQDLQSSKDFRDTLEVLDSNKDLLLKYFKRPDSLFKKHLNDLQTVPVQSHYRHAETMDIEKYEDDLSWRSDREKTRLNYNRSHEKHLDGYPYHFDKRHVMHSSPKSSKLQFQGRHEQDAVPTKIVLLKPNLGKVQGTRIASSPCSHNFLSGREGDGELCQVTNLPESASSWRQDSFESREIAKEITRQMRNSLNNSGMMLSTSRIAGYAGDDSSCSISGNESPDISGEITATLGNSFDLNSRSRRSSHSGESSVSREAKKRLSERWKMTHKSQEVEGISRSSTLAEMLSIPDKDLKAANFVGTATGEGFHDKFTPNSEPAKWVEPLGISSRDGWKDGCIGSLSRSQSLPSSSTSFGSPKTFLRTEALCSDRYMVPKEGHKRERRRAAKSLDHRHGVNNRSPRSGHKKSWSLHSSKLEVDEFCADLHTVQNKMNIILEDSAKLEVPSAVADDDTEVTNGSIVESSEPLNKVLPELSSHVVIEGHGGAVGNNSIQQDLSAASPHGSSVIHEPPVPGLETSCCKDADQPSPVSILEPAFTDDLSSCSECFESLSADLQGLRMQLQLLKLESDDYAEGPMTVSDEEGEEVSAGMSAADKGLCRTTEDSWECSYIMDVLSESGIDGIQLDTILEVWHSLECPVSLSVFDELEKRYSDGTTCSRSQRRLLFDHINIGILKISKQFSFSRSAIKNAIGSNLTKNGFRDGLLRMVVNEATVSDGGQGNVVVGESEWMDLKVYTDGIAREVERSLLDDLVAEVIST 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium808g00002 950 Pfam DUF761-associated sequence motif 79 99 IPR032795 -
Vium808g00002 950 MobiDBLite consensus disorder prediction 107 132 - -
Vium808g00002 950 MobiDBLite consensus disorder prediction 569 603 - -
Vium808g00002 950 Pfam Domain of unknown function (DUF4378) 800 946 IPR025486 -
Vium808g00002 950 Pfam Protein of unknown function (DUF3741) 182 226 IPR022212 -
Vium808g00002 950 Coils Coil 740 760 - -
Vium808g00002 950 MobiDBLite consensus disorder prediction 70 89 - -
Vium808g00002 950 MobiDBLite consensus disorder prediction 107 123 - -
Vium808g00002 950 MobiDBLite consensus disorder prediction 431 461 - -
Vium808g00002 950 MobiDBLite consensus disorder prediction 70 85 - -
Vium808g00002 950 MobiDBLite consensus disorder prediction 1 57 - -
Vium808g00002 950 MobiDBLite consensus disorder prediction 442 461 - -
Vium808g00002 950 PANTHER AFADIN 21 949 - -
Vium808g00002 950 MobiDBLite consensus disorder prediction 8 39 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium808g00002 Vium-Chr808 19479 24984 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium808g00002 64 948 TRM (TON1 Recruiting Motif) Superfamily AT3G53540 35.855 7.23e-129 411
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium808g00002 - - ccaj:109788117 1311.59