Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8089g00001 ATGCGAAAACCTTGCTGTGACAAAGAAAACATCAATAAAGGAGCATGGTCTAAGCAAGAAGATCAAAAGCTCATTGATTACATCAGAGTTCACGGTGAAGGTTGTTGGCGTTCCATTCCCAAAGCTGCTGGGTTGCATCGTTGTGGCAAAAGCTGCAGGCTGAGATGGTTAAACTATTTGCGACCAGATATCAAACGTGGAATCTTTGCTGAAGATGAAGAAGACCTTATCATCAAACTCCACGCCCTCCTTGGTAACAGGTGGTCACTCATTGCTGGAAGATTGCCTGGAAGAACAGACAATGAAGTGAAGAACTATTGGAATTCTCACATCCGAAGAAAACTGATAAAGATGGGAATTGATCCAAATAACCATAAGCCACACCAAAGCTTTTCTCGTCCTCATGCTTCTTCTGCCGAGGCTGCATCAACATCCGAATCCATGAATAATAAAGTTCCTATCTTCAAATCTCCACTTGCTGCCACTCATCATAGGATTTCCTTCACAGAACAAGAATCTGCAATAATTTCGTCACCCTCTTTGAATCTTGACCTAACAATTGCTTTACCTTCTTCTATGATTGGTGCTTTGGAAGACAAGCCTGTACAAAATTCTGAGTCCACCAAGACACTGGACATGGAAATAGATCTCAACTGTTAG 660 0.4197 MRKPCCDKENINKGAWSKQEDQKLIDYIRVHGEGCWRSIPKAAGLHRCGKSCRLRWLNYLRPDIKRGIFAEDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRRKLIKMGIDPNNHKPHQSFSRPHASSAEAASTSESMNNKVPIFKSPLAATHHRISFTEQESAIISSPSLNLDLTIALPSSMIGALEDKPVQNSESTKTLDMEIDLNC 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8089g00001 219 FunFam MYB-related transcription factor 12 65 - -
Vium8089g00001 219 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Vium8089g00001 219 CDD SANT 71 111 IPR001005 -
Vium8089g00001 219 Gene3D - 68 143 - -
Vium8089g00001 219 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Vium8089g00001 219 CDD SANT 15 60 IPR001005 -
Vium8089g00001 219 Gene3D - 13 65 - -
Vium8089g00001 219 SMART sant 65 113 IPR001005 -
Vium8089g00001 219 SMART sant 12 62 IPR001005 -
Vium8089g00001 219 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 161 - -
Vium8089g00001 219 MobiDBLite consensus disorder prediction 125 147 - -
Vium8089g00001 219 MobiDBLite consensus disorder prediction 122 147 - -
Vium8089g00001 219 FunFam Transcription repressor MYB4 68 134 - -
Vium8089g00001 219 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 64 IPR017930 -
Vium8089g00001 219 Pfam Myb-like DNA-binding domain 68 110 IPR001005 -
Vium8089g00001 219 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Vium8089g00001 219 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Vium8089g00001 219 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8089g00001 Vium-Chr8089 16081 18010 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8089g00001 2 193 MYB Transcription Factor Family AT4G38620 54.808 3.37e-78 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium8089g00001 Myb_DNA-binding 1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8089g00001 K09422 - gmx:100306391 360.533