Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8086g00002 ATGTCTGATGAATGCTTTTATGTTAGTGATGCTGATAACAAATCAGGGACTGCATCTATGGCTAGTGATCTTAGAACGGAACTTGATATTCATGTGAAGGGTGATGTAGTGGCACCGGTTTTGTCATTCTATGCCTGTAACCTCCCTGATAAGCTACTCCACAATATAGAAGCAGCAGGATATGACATGCCTACACCTGTCCAGATGCAAGCAATTCCTGCTGCTTTGACGGGCAAAAACATGCTTGTTTTGGCCAATACTGGATCTGGGAAGTCTGCTTCGTTTCTTATTCCTATAGTTTCTCGTTGTGTGATTCATCGCCAGCAATATGTTTCAGTTAAGAAGCCTTTGGTTATGGTGTTAACACCCACCAGAGAGCTCTGTATACAGGTCGAAGAGCATGCTAAGATGCTTGGCAAGGGATTGCCTTTCAAAACTGCACTTGTGGTTGGTGGTGACGCCATGGCTGGACAACTCCATCGCATTCAACAAGGGGTGGAATTGATTGTAGGAACCCCGGGAAGACTTGTTGATCTTCTAAGTAAGCATGAGATTGACTTGGATGATGTCATGACTTTTGTTGTGGATGAGGTGGACTGTATGCTGCAAAGGGGTTTTAGAGATCAGGTCATGCAGATATACAGGGCTCTGTCACAACCCCAGGTCTTGATGTATTGTGCCACAATGTCTAATGATTTAGAGAAGATGATTAACACGCTGGCGAAAGGTACAGTGGTTATCTCTGTTGGAGAACCTAATAGAGCAAATAAGGCTGTGAAGCAGGTAGCTATTTGGGTTGAGTCAAAGCAAAAGAAACAGAAATTGTTTGACATTTTGACAACTAAGAAGCATTTTAAGCCACCTGTTGTAGTATATGTGGGATCCAGACTTGGGGCAGATCTTCTGGCTAATGCAATTACAGTTGCCACTGGAATTAAAGCAGTTTCAATTCATGGGGAGAAGTCTATGAAGGAAAGGAGAGAAATAATGCAGTCCTTTTTTATTGGTGAGGTCCCAGTGGTTGTAGCTACTGGAGTTTTAGGCAGGGGGGTAGATCTGCTGGGTGTAAGACAGGTTATTGTATTTGACATGCCTAATTCCATTAAGGAATACGTACATCAGATTGGAAGGGCATCTAGAATGGGAGAAGAAGGTGAAGGTATAGTTTTTGTGAATGAGGAAAACAAGAATGTCTTTCCAGACTTAATTGATATTCTGAAATCTGGTGGAGCAGCTGTGCCTCGGGAGCTTGCCAATTCACGGTACGCCACAGGATTCTTCTATGGTGGGAAGGCTTCGAAAAAGAGAAAGAACACAGGATAG 1323 0.4324 MSDECFYVSDADNKSGTASMASDLRTELDIHVKGDVVAPVLSFYACNLPDKLLHNIEAAGYDMPTPVQMQAIPAALTGKNMLVLANTGSGKSASFLIPIVSRCVIHRQQYVSVKKPLVMVLTPTRELCIQVEEHAKMLGKGLPFKTALVVGGDAMAGQLHRIQQGVELIVGTPGRLVDLLSKHEIDLDDVMTFVVDEVDCMLQRGFRDQVMQIYRALSQPQVLMYCATMSNDLEKMINTLAKGTVVISVGEPNRANKAVKQVAIWVESKQKKQKLFDILTTKKHFKPPVVVYVGSRLGADLLANAITVATGIKAVSIHGEKSMKERREIMQSFFIGEVPVVVATGVLGRGVDLLGVRQVIVFDMPNSIKEYVHQIGRASRMGEEGEGIVFVNEENKNVFPDLIDILKSGGAAVPRELANSRYATGFFYGGKASKKRKNTG 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8086g00002 440 CDD SF2_C_DEAD 259 391 - -
Vium8086g00002 440 Gene3D - 248 423 IPR027417 -
Vium8086g00002 440 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 72 247 IPR014001 -
Vium8086g00002 440 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 396 IPR027417 -
Vium8086g00002 440 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 36 419 - -
Vium8086g00002 440 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 31 249 IPR027417 -
Vium8086g00002 440 Pfam Helicase conserved C-terminal domain 272 382 IPR001650 -
Vium8086g00002 440 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 258 421 IPR001650 -
Vium8086g00002 440 SMART helicmild6 300 382 IPR001650 -
Vium8086g00002 440 SMART ultradead3 60 262 IPR014001 -
Vium8086g00002 440 Pfam DEAD/DEAH box helicase 65 235 IPR011545 GO:0003676|GO:0005524
Vium8086g00002 440 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 41 69 IPR014014 GO:0003724
Vium8086g00002 440 Gene3D - 7 247 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8086g00002 Vium-Chr8086 4530 6970 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8086g00002 42 402 Eukaryotic Initiation Factors Gene Family AT1G72730 31.956 2.52e-52 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8086g00002 K19466 - gmx:100781473 769.229