Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8086g00001 ATGACTGATCCTCACGCCTATCACAACAACCCATCTCTCGGTACCGATGCTGATGCACCAGAGGATGCTGGGGAAGATGTCAAGCTGAGGTCTAGGGACCAAAGACTGGCTCTGCAAGGTGAGCCTAAGTGTGTTATATGCGGCCGCTACGGTGAATACATATGTGATGAAACTGATGATGATGTTTGCAGTTTGGAATGCAAACAGGCACTGCTTGGAAGAATTGCGAAATCATTGGCTCCTTCTGGAAATCTTCTGCCACCTAAAAAGATTCCTATGTCTGATGAATGCTTTTATGTTAGTGATGCTGATAACAAATCAGGGACTGCATCTATGGCTAGTGATCTTAGAACGGAACTTGATATTCATGTGAAGGGTGATGTAGTGGCACCGGTTTTGTCATTCTATGCCTGTAACCTCCCTGATAAGCTACTCCACAATATAGAAGCAGCAGGATATGACATGCCTACACCTGTCCAGATGCAAGCAATTCCTGCTGCTTTGACGGGCAAAAACATGCTTGTTTTGGCCAATACTGGATCTGGGAAGTCTGCTTCGTTTCTTATTCCTATAGTTTCTCGTTGTGTGATTCATCGCCAGCAATATGTTTCAGTTAAGAAGCCTTTGGTTATGGTGTTAACACCCACCAGAGAGCTCTGTATACAGGTCGAAGAGCATGCTAAGATGCTTGGCAAGGGATTGCCTTTCAAAACTGCACTTGTGGTTGGTGGTGACGCCATGGCTGGACAACTCCATCGCATTCAACAAGGGGTGGAATTGATTGTAGGAACCCCGGGAAGACTTGTTGATCTTCTAAGTAAGCATGAGATTGACTTGGATGATGTCATGACTTTTGTTGTGGATGAGGTGGACTGTATGCTGCAAAGGGGTTTTAGAGATCAGGTCATGCAGATATACAGGGCTCTGTCACAACCCCAGGTCTTGATGTATTGTGCCACAATGTCTAATGATTTAGAGAAGATGATTAACACGCTGGCGAAAGGTACAGTGGTTATCTCTGTTGGAGAACCTAATAGAGCAAATAAGGCTGTGAAGCAGGTAGCTATTTGGGTTGAGTCAAAGCAAAAGAAACAGAAATTGTTTGACATTTTGACAACTAAGAAGCATTTTAAGCCACCTGTTGTAGTATATGTGGGATCCAGACTTGGGGCAGATCTTCTGGCTAATGCAATTACAGTTGCCACTGGAATTAAAGCAGTTTCAATTCATGGGGAGAAGTCTATGAAGGAAAGGAGAGAAATAATGCAGTCCTTTTTTATTGGTGAGGTCCCAGTGGTTGTAGCTACTGGAGTTTTAGGCAGGGGGGTAGATCTGCTGGGTGTAAGACAGGTTATTGTATTTGACATGCCTAATTCCATTAAGGAATACGTACATCAGATTGGAAGGGCATCTAGAATGGGAGAAGAAGGTGAAGGTATAGTTTTTGTGAATGAGGAAAACAAGAATGTCTTTCCAGACTTAATTGATATTCTGAAATCTGGTGGAGCAGCTGTGCCTCGGGAGCTTGCCAATTCACGGTACGCCACAGGATTCTTCTATGGTGGGAAGGCTTCGAAAAAGAGAAAGAACACAGGATAG 1599 0.4396 MTDPHAYHNNPSLGTDADAPEDAGEDVKLRSRDQRLALQGEPKCVICGRYGEYICDETDDDVCSLECKQALLGRIAKSLAPSGNLLPPKKIPMSDECFYVSDADNKSGTASMASDLRTELDIHVKGDVVAPVLSFYACNLPDKLLHNIEAAGYDMPTPVQMQAIPAALTGKNMLVLANTGSGKSASFLIPIVSRCVIHRQQYVSVKKPLVMVLTPTRELCIQVEEHAKMLGKGLPFKTALVVGGDAMAGQLHRIQQGVELIVGTPGRLVDLLSKHEIDLDDVMTFVVDEVDCMLQRGFRDQVMQIYRALSQPQVLMYCATMSNDLEKMINTLAKGTVVISVGEPNRANKAVKQVAIWVESKQKKQKLFDILTTKKHFKPPVVVYVGSRLGADLLANAITVATGIKAVSIHGEKSMKERREIMQSFFIGEVPVVVATGVLGRGVDLLGVRQVIVFDMPNSIKEYVHQIGRASRMGEEGEGIVFVNEENKNVFPDLIDILKSGGAAVPRELANSRYATGFFYGGKASKKRKNTG 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8086g00001 532 Gene3D - 341 515 IPR027417 -
Vium8086g00001 532 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 126 511 - -
Vium8086g00001 532 Pfam DEAD/DEAH box helicase 157 327 IPR011545 GO:0003676|GO:0005524
Vium8086g00001 532 Pfam HIT zinc finger 42 68 IPR007529 -
Vium8086g00001 532 FunFam DEAD-box ATP-dependent RNA helicase 41 24 81 - -
Vium8086g00001 532 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 279 488 IPR027417 -
Vium8086g00001 532 SMART helicmild6 392 474 IPR001650 -
Vium8086g00001 532 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 123 341 IPR027417 -
Vium8086g00001 532 SMART ultradead3 152 354 IPR014001 -
Vium8086g00001 532 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 164 339 IPR014001 -
Vium8086g00001 532 Gene3D - 24 80 - -
Vium8086g00001 532 Gene3D - 99 340 IPR027417 -
Vium8086g00001 532 Pfam Helicase conserved C-terminal domain 364 474 IPR001650 -
Vium8086g00001 532 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 133 161 IPR014014 GO:0003724
Vium8086g00001 532 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 350 513 IPR001650 -
Vium8086g00001 532 CDD SF2_C_DEAD 351 483 - -
Vium8086g00001 532 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8086g00001 Vium-Chr8086 4296 6970 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8086g00001 134 494 Eukaryotic Initiation Factors Gene Family AT1G72730 31.956 2.10e-51 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8086g00001 K19466 - gmx:100781473 910.983