Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8082g00003 ATGCTCAATTTTCAGAAGCTATCTCTTCTATGGACGCTGCTGTTTCTGGTAGGGAATCCTGCGACCGGCAAGAACCACGTCGCCGATAAATGTGGCAAAGTTCGCATTGAATTTCCATTTTATCTCAGAAATAAAAACTTGAATCACACCACCGACTACCCGCCTGAGTTCGGTCTGCTATGTACCCAACAAAATGAGCCCATTCTGGAGCTGCCTGCCCTTCCAATACAATTGTTTGTCACAGAAATTGATTACCAGTCTATGCTAATTAGAATATATGACCCCCAAAATTGCCTTAATGATCAACTCTTGAAACTCGGCACGACATCCATCTCTCCATTCCGATTTCCCATAGATGATGCTAAGTTTCAAGTTTCCGTCTTCCAATGCGATTCCTCGTGCCCAATTTTTGTAGGAGGATCCCACATCGTCTCCACTCACCCGCAATTGGTATCCTGCACGAAGCTGAAAGATGTTTACGTCGAAGGGTGGAGTTGGTATAATGGGGGTAAGCTTGATATGGAATGGTCAAAACCTGACTGTGGAGACTGTGAAGCACAAGGCCAAAAATGCAAATGGAAGAATGGTACTAACCGTGCAACTGAATGTTATGCTAGCCAAACAAAAAGGATTCCCACGTCAACCGTCGTCCGCATTGCTGCAGGAATAGGTGGTTTCATGCTTTTGCTGCTATCGGTCAAGGCATTGTTTTATACATATGACTTCTATAAGAAGAGAGGAGAAGACCAGGCTCGAATAGAGAAATTCTTGGAGGATTACAGGGCAATGAAGCCCACCAGATTCACTTATGCTGACATCAAGAGAATCACAAATGGTTTTAGTGAGAGTTTAGGGGAAGGATCTCATGGAGCAGTGTTCAAAGGAATGCTCTCTAGTGAAATTATTGTTGCTGTGAAGATACTCAAAGACACAGTGGGAGATGGAAAGGATTTCATAAATGAAGTGAGAGCCATTGGGAAAATTCATCACGTTAACATTGTTCGCCTGCTTGGTTTCTGTGCAGATGAGTTCCACCGTGCTCTCGTCTACGATTTCTTTCCGAATGGGTCGTTGCAGAGATTCTTGGTTCAACGGGACAACAAGGATGTTTTCCTTGGTTGGGAGAAGTTGCAACAAATTGGTCTTGGTGTTGGGAAAGGGATTGAGTATCTCCACCTTGGTTGTGATCATAGAATTCTTCACTTTGACATTAATCCTCACAATGTTTTGTTAGATGACCTTTTTGTCCCAAAAATCACTGATTTTGGCTTAGCCAAGCTGTGTCCCAAAAATCAGAGCACCGTGTCGATGACTGCCGCCAGGGGAACTTTGGGGTACATTGCCCCTGAGGTTTTCTCTCGGAACTTTGGTAATGTGTCTTACAAGTCTGACATTTACAGCTATGGGATGTTGCTCTTAGAAATGGTTGGAGGAAGAAAGAATACAAATGTGTCAGTTGAGGACAGTTTCCAAATTCTGTACCCAGAGTGGATCCATAACTTGGTGGAAGGAAAAGATGTGCAAATTAGCGTTGAGGATGATGCAGATGCTAAAATTGCCAAGAAACTTGCCATTGTAGGACTTTGGTGCATTCAGTGGAACCCAGCTGATCGTCCTTCCATGAAAACTGTGGTACAAATGCTTGAAGGGGATGGATGTGAGTTAGTAGCACCCCCTTCTCCTTTTCATATTTCTGGTTCTTCTACAACAAATACCATTTTTCCTGCAAGGCGTCAAAATTTTGAGTTGGAGGTTATTCATGAAATAGAAGAAAACAGTGTCGATCACTTTTAG 1794 0.432 MLNFQKLSLLWTLLFLVGNPATGKNHVADKCGKVRIEFPFYLRNKNLNHTTDYPPEFGLLCTQQNEPILELPALPIQLFVTEIDYQSMLIRIYDPQNCLNDQLLKLGTTSISPFRFPIDDAKFQVSVFQCDSSCPIFVGGSHIVSTHPQLVSCTKLKDVYVEGWSWYNGGKLDMEWSKPDCGDCEAQGQKCKWKNGTNRATECYASQTKRIPTSTVVRIAAGIGGFMLLLLSVKALFYTYDFYKKRGEDQARIEKFLEDYRAMKPTRFTYADIKRITNGFSESLGEGSHGAVFKGMLSSEIIVAVKILKDTVGDGKDFINEVRAIGKIHHVNIVRLLGFCADEFHRALVYDFFPNGSLQRFLVQRDNKDVFLGWEKLQQIGLGVGKGIEYLHLGCDHRILHFDINPHNVLLDDLFVPKITDFGLAKLCPKNQSTVSMTAARGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNTNVSVEDSFQILYPEWIHNLVEGKDVQISVEDDADAKIAKKLAIVGLWCIQWNPADRPSMKTVVQMLEGDGCELVAPPSPFHISGSSTTNTIFPARRQNFELEVIHEIEENSVDHF 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8082g00003 597 Pfam Protein kinase domain 282 546 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8082g00003 597 Gene3D Phosphorylase Kinase; domain 1 252 352 - -
Vium8082g00003 597 ProSitePatterns Protein kinases ATP-binding region signature. 284 306 IPR017441 GO:0005524
Vium8082g00003 597 Gene3D Transferase(Phosphotransferase) domain 1 353 554 - -
Vium8082g00003 597 SUPERFAMILY Protein kinase-like (PK-like) 260 549 IPR011009 -
Vium8082g00003 597 PANTHER RUST RESISTANCE KINASE LR10-RELATED 250 567 IPR045874 GO:0004672
Vium8082g00003 597 FunFam serine/threonine-protein kinase PBS1-like 246 352 - -
Vium8082g00003 597 FunFam PR5-like receptor kinase 353 558 - -
Vium8082g00003 597 ProSiteProfiles Protein kinase domain profile. 278 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8082g00003 597 Pfam Wall-associated receptor kinase galacturonan-binding 30 94 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8082g00003 Vium-Chr8082 15577 18745 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8082g00003 180 561 Receptor kinase-like Gene Family AT1G66910 41.975 3.88e-99 314
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vium8082g00003 Pkinase 1.8e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8082g00003 - - var:108338466 1190.25