Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vium8082g00003 | ATGCTCAATTTTCAGAAGCTATCTCTTCTATGGACGCTGCTGTTTCTGGTAGGGAATCCTGCGACCGGCAAGAACCACGTCGCCGATAAATGTGGCAAAGTTCGCATTGAATTTCCATTTTATCTCAGAAATAAAAACTTGAATCACACCACCGACTACCCGCCTGAGTTCGGTCTGCTATGTACCCAACAAAATGAGCCCATTCTGGAGCTGCCTGCCCTTCCAATACAATTGTTTGTCACAGAAATTGATTACCAGTCTATGCTAATTAGAATATATGACCCCCAAAATTGCCTTAATGATCAACTCTTGAAACTCGGCACGACATCCATCTCTCCATTCCGATTTCCCATAGATGATGCTAAGTTTCAAGTTTCCGTCTTCCAATGCGATTCCTCGTGCCCAATTTTTGTAGGAGGATCCCACATCGTCTCCACTCACCCGCAATTGGTATCCTGCACGAAGCTGAAAGATGTTTACGTCGAAGGGTGGAGTTGGTATAATGGGGGTAAGCTTGATATGGAATGGTCAAAACCTGACTGTGGAGACTGTGAAGCACAAGGCCAAAAATGCAAATGGAAGAATGGTACTAACCGTGCAACTGAATGTTATGCTAGCCAAACAAAAAGGATTCCCACGTCAACCGTCGTCCGCATTGCTGCAGGAATAGGTGGTTTCATGCTTTTGCTGCTATCGGTCAAGGCATTGTTTTATACATATGACTTCTATAAGAAGAGAGGAGAAGACCAGGCTCGAATAGAGAAATTCTTGGAGGATTACAGGGCAATGAAGCCCACCAGATTCACTTATGCTGACATCAAGAGAATCACAAATGGTTTTAGTGAGAGTTTAGGGGAAGGATCTCATGGAGCAGTGTTCAAAGGAATGCTCTCTAGTGAAATTATTGTTGCTGTGAAGATACTCAAAGACACAGTGGGAGATGGAAAGGATTTCATAAATGAAGTGAGAGCCATTGGGAAAATTCATCACGTTAACATTGTTCGCCTGCTTGGTTTCTGTGCAGATGAGTTCCACCGTGCTCTCGTCTACGATTTCTTTCCGAATGGGTCGTTGCAGAGATTCTTGGTTCAACGGGACAACAAGGATGTTTTCCTTGGTTGGGAGAAGTTGCAACAAATTGGTCTTGGTGTTGGGAAAGGGATTGAGTATCTCCACCTTGGTTGTGATCATAGAATTCTTCACTTTGACATTAATCCTCACAATGTTTTGTTAGATGACCTTTTTGTCCCAAAAATCACTGATTTTGGCTTAGCCAAGCTGTGTCCCAAAAATCAGAGCACCGTGTCGATGACTGCCGCCAGGGGAACTTTGGGGTACATTGCCCCTGAGGTTTTCTCTCGGAACTTTGGTAATGTGTCTTACAAGTCTGACATTTACAGCTATGGGATGTTGCTCTTAGAAATGGTTGGAGGAAGAAAGAATACAAATGTGTCAGTTGAGGACAGTTTCCAAATTCTGTACCCAGAGTGGATCCATAACTTGGTGGAAGGAAAAGATGTGCAAATTAGCGTTGAGGATGATGCAGATGCTAAAATTGCCAAGAAACTTGCCATTGTAGGACTTTGGTGCATTCAGTGGAACCCAGCTGATCGTCCTTCCATGAAAACTGTGGTACAAATGCTTGAAGGGGATGGATGTGAGTTAGTAGCACCCCCTTCTCCTTTTCATATTTCTGGTTCTTCTACAACAAATACCATTTTTCCTGCAAGGCGTCAAAATTTTGAGTTGGAGGTTATTCATGAAATAGAAGAAAACAGTGTCGATCACTTTTAG | 1794 | 0.432 | MLNFQKLSLLWTLLFLVGNPATGKNHVADKCGKVRIEFPFYLRNKNLNHTTDYPPEFGLLCTQQNEPILELPALPIQLFVTEIDYQSMLIRIYDPQNCLNDQLLKLGTTSISPFRFPIDDAKFQVSVFQCDSSCPIFVGGSHIVSTHPQLVSCTKLKDVYVEGWSWYNGGKLDMEWSKPDCGDCEAQGQKCKWKNGTNRATECYASQTKRIPTSTVVRIAAGIGGFMLLLLSVKALFYTYDFYKKRGEDQARIEKFLEDYRAMKPTRFTYADIKRITNGFSESLGEGSHGAVFKGMLSSEIIVAVKILKDTVGDGKDFINEVRAIGKIHHVNIVRLLGFCADEFHRALVYDFFPNGSLQRFLVQRDNKDVFLGWEKLQQIGLGVGKGIEYLHLGCDHRILHFDINPHNVLLDDLFVPKITDFGLAKLCPKNQSTVSMTAARGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNTNVSVEDSFQILYPEWIHNLVEGKDVQISVEDDADAKIAKKLAIVGLWCIQWNPADRPSMKTVVQMLEGDGCELVAPPSPFHISGSSTTNTIFPARRQNFELEVIHEIEENSVDHF | 597 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vium8082g00003 | 597 | Pfam | Protein kinase domain | 282 | 546 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vium8082g00003 | 597 | Gene3D | Phosphorylase Kinase; domain 1 | 252 | 352 | - | - | |
Vium8082g00003 | 597 | ProSitePatterns | Protein kinases ATP-binding region signature. | 284 | 306 | IPR017441 | GO:0005524 | |
Vium8082g00003 | 597 | Gene3D | Transferase(Phosphotransferase) domain 1 | 353 | 554 | - | - | |
Vium8082g00003 | 597 | SUPERFAMILY | Protein kinase-like (PK-like) | 260 | 549 | IPR011009 | - | |
Vium8082g00003 | 597 | PANTHER | RUST RESISTANCE KINASE LR10-RELATED | 250 | 567 | IPR045874 | GO:0004672 | |
Vium8082g00003 | 597 | FunFam | serine/threonine-protein kinase PBS1-like | 246 | 352 | - | - | |
Vium8082g00003 | 597 | FunFam | PR5-like receptor kinase | 353 | 558 | - | - | |
Vium8082g00003 | 597 | ProSiteProfiles | Protein kinase domain profile. | 278 | 563 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Vium8082g00003 | 597 | Pfam | Wall-associated receptor kinase galacturonan-binding | 30 | 94 | IPR025287 | GO:0030247 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vium8082g00003 | Vium-Chr8082 | 15577 | 18745 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vium8082g00003 | 180 | 561 | Receptor kinase-like Gene Family | AT1G66910 | 41.975 | 3.88e-99 | 314 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRK10L-2 | Vium8082g00003 | Pkinase | 1.8e-43 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vium8082g00003 | - | - | var:108338466 | 1190.25 |