Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8082g00002 ATGAGCCTCTTACCCTCTTGCTTTCGCTGCTCACAATCAGTGGTTGTGTCGGTGGTCATCATTCTTGTGCTATTCCACCAAACTTGCAGTGCCAAGCATCGCAGGTCCTGTCCATCTTCTTCGTGCGGCGAAATTCTCGACATAAAATATCCATTCCGACTGAAAGGCGATCCTCGCGGTTGCGGCCTCCCCGGGTACGAATTTGATTGCGTGAATAACAGGACACTGGTTACTCTGTTTTCAGGAAAATACTATGTGAAGGAAATCAATTACAATATGTACGAAATCCGGCTGAGTGAAGCGGGTGTTTTGGAGGAGACTTCTTGCTCTTTTCCTCGCTATTTCTTATCCGGAACAAATTTCAGTGCCAACGGTGCTGATCCGCTGACTTTTCCGGACTATTGGTCGCATGGTTATTGTTCTGCAGAAGTAGGGTTTCTTAACTGTAGTAACCGAGTGAGTGATGATCCTCGATATGTCGAAGTGAAAGCATGTGGTAGTGATTCCGGAGGAGTTATCTACGCCGTTCTGGACCTTACAGCGAAGGACACGAAGGTTGGATGCAGATTAAAGATGGCTACCTTGGCAAACTGTACGGATAACAAGAATAATGTTTCCTATGCTGATATCCTCAAATCTATGGAAGAAGGAATTTGGTTGTCTTGGTTTCCAGTTGTTTGCAGGGACTACTGTGGAAATGGTGTCTCTTGCTTCCTCAATGACACCACCAAACAAATTCAATGCGATACTTGCCAGATCTACAACCACCCTACCCACAATTGTGGAATTCTATCGCGTATTATTGGATACCCTACAGGTACACACGCTATCCCATGGTTTTGTTAA 846 0.4527 MSLLPSCFRCSQSVVVSVVIILVLFHQTCSAKHRRSCPSSSCGEILDIKYPFRLKGDPRGCGLPGYEFDCVNNRTLVTLFSGKYYVKEINYNMYEIRLSEAGVLEETSCSFPRYFLSGTNFSANGADPLTFPDYWSHGYCSAEVGFLNCSNRVSDDPRYVEVKACGSDSGGVIYAVLDLTAKDTKVGCRLKMATLANCTDNKNNVSYADILKSMEEGIWLSWFPVVCRDYCGNGVSCFLNDTTKQIQCDTCQIYNHPTHNCGILSRIIGYPTGTHAIPWFC 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8082g00002 281 PANTHER OS01G0690200 PROTEIN 16 259 - -
Vium8082g00002 281 Pfam Wall-associated receptor kinase galacturonan-binding 37 99 IPR025287 GO:0030247
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8082g00002 Vium-Chr8082 1368 15730 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8082g00002 31 248 C3H Transcription Factor Family AT2G46495 26.549 8.55e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8082g00002 - - vum:124846303 572.007