Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8074g00013 ATGGTGGCAGTAGCAGTAGGAAGAGGCCTTCCTATTCAAACCCGCTATTTATTCAATAGTAAGAGCATAGATAGAGCTTCACCAGCAGGAAGAGTCTCGTGGCTTGGGCATTCTGCTGCTGTCACTCCACATTATAGACAAACTTGTGTAGCAGCGCAACAGCGACCTACATGGCTCCCAGGACTTGATCCCCCACCTTATCTTGATGGAACTCTGGCTGGAGATTTTGGATTTGACCCACTTGGGCTTGGAGAGGATCCTGAAAACTTAAGGTGGTATGTGCAGGCAGAGCTGGTTCATTCCCGCTTTGCAATGCTTGGGGTATTGGGAATTCTTGTGACAGATCTGCTTCGCGTCACAGGAGTTAGTAAGATACCGGTTTGGTTTGAAGCTGGTGCAGTAAAATACGACCTTGCCAATACACAGACACTCTTCATTGTTCAACTACTTTTGATGGGGTTTGCCGAAACAAAAAGGTACATGGATTTTATTAGTCCTGGATCTCAGGCTAAAGAGGGGTCCTTCTTTGGACTGGAAGCTTCACTGGAAGGCTTAGAGCCAGGGTACCCAGGGGGTCCTCTGCTAAATCCTCTTGGCCTAGCTAAAGACATTAAAAACGCTCATGATTCGAAGCTTAAAGAGATTAAAAATGGACGACTTGCAATGGTTGCAATGGTTGGCTTCTTTGTACAAGCTTCGGTGACTCACGTTGGACCAATTGACAACCTTGTGGAGCATCTTTCCAATCCATGGCATAAAACTATTATTCAGACCATTGCGAATTCTAGTTCTTAG 795 0.4579 MVAVAVGRGLPIQTRYLFNSKSIDRASPAGRVSWLGHSAAVTPHYRQTCVAAQQRPTWLPGLDPPPYLDGTLAGDFGFDPLGLGEDPENLRWYVQAELVHSRFAMLGVLGILVTDLLRVTGVSKIPVWFEAGAVKYDLANTQTLFIVQLLLMGFAETKRYMDFISPGSQAKEGSFFGLEASLEGLEPGYPGGPLLNPLGLAKDIKNAHDSKLKEIKNGRLAMVAMVGFFVQASVTHVGPIDNLVEHLSNPWHKTIIQTIANSSS 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8074g00013 264 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 47 261 IPR001344 GO:0009765|GO:0016020
Vium8074g00013 264 FunFam Chlorophyll a-b binding protein, chloroplastic 56 263 - -
Vium8074g00013 264 Pfam Chlorophyll A-B binding protein 64 232 IPR022796 -
Vium8074g00013 264 SUPERFAMILY Chlorophyll a-b binding protein 50 261 - -
Vium8074g00013 264 Gene3D Chlorophyll a/b binding protein domain 56 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8074g00013 Vium-Chr8074 54983 56857 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8074g00013 47 256 Chloroplast and Mitochondria Gene Families AT3G61470 46.445 9.44e-61 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8074g00013 K08911 - gmx:100804934 433.335