Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8049g00001 ATGAGGATCAAAGCAGAAATATCCATGATCCCTACTGGGATTAGTCTTAGTTTCATGTTTCTCCTTTTCACCACCGCAAGTGCTCAACCACCGATTTACATGTACAATTTTTGTGAGAACTCAACTCTTAGCTCCTCATACAAAGACAACGTTGAAACCCTTCTCTCATGGCTAACCACAGACTCATTCAAAAGCAACGGATACAACTTCACCACTGTAAATAGCAACAACAACAACAATGATGATGATGTTTATGGATTGTACAGCTGCAGATACGACATCACAGGGTATTTTTGCCAGTTCTGCATCACCACTGCTGCCACTGAACTCTCTCGGAGGTGTCCCAACGCTGTAAGAGCTATCATATGGTATGATGTATGCATCATCCGTTACTCAAACCAAAGTTTCATTGGCAATGTTACTTTAACCCCAACATGGAATATTACAGGACCCAGAATAATCAAGCATTCATCAGAATCTAGGAAAGCTGAGGACTCTGTGCAGAGTTTGATTTGGAAAGCAACCGTAGAGACGAAGAAGTTTTGGGCAGTGGATGAGTTTGATTGGGTTGACAATGAGAAAAGATATGGGTGGGTACAGTGTGACAGAGGTATTAAAAATGATCAGTGTGGTGAGTGCTTGCATGCATTGTTAGACATATTTCCAGAGTGTTGTTCAACACATGCACAGTGGGCAGTTTTTGGTCCAAGTTGTGGCATTAGGATGGATGATGAGAAGTTTTACCAGACTTCAGGTGCGATGGAGGTTCAACTCTACTATGCTTCGGTGTCTACTGCTTCTGGTACAGGAAAAGAGTCAGAAGAGTTCATCTTTTATACCGTATCAGGCGATGGAGGTTCTAGTAAGTCAAGAAAGTTTATCATTTCCTTTAGTGTTTTGGGGTCTGTAGCTCTACTATGCTTCGGTGTCTACTGCTTCTGGTACAGGAAAAGAGTCAGAAGAGGTAATTTGCTGCAGTAAGTAAACACTTGCTTGATTTTTTAAAAAAGATTGCTTTCAGGTCCTCAAATATGGATTCAAAAACTTGTCATTGTAGATAAGATGATGTTTGATGAGGAAACGTTGCATGGCGACCTTCCTACAATCCCGTTAATCGCAGTTCTACATAGTACTAATAACTTTTCAGAAGAATCTAAATTAGGGGAAGGTGGATTTGGTCCTGTTTACAAGGGAATTCTACCAGATGGAAGACAAATTGCAGTGAAAAGGCTCTCGAAATTTTCTGGTCAGGGCACACAGGAGTTCAAGAATGAAGTAATGTTTATAGCTAAATTGCAACATCGTAACCTCGTCAGACTTTTGGGATGCTGCTTAGAGGAAAAGGAGAATATACTTGTATATGAGTATATGTGTAATGCAAGCCTTGACTCTCACCTCTTTGGTGGCGATGAGAAGAGAAATCAACTTGATTGGAAACTAAGATTCAGCATTATCAATGGAATAGCAAAAGGTATTTTATATCTTCATGAGGACTCTCGACTCAAAGTAATTCATAGAGATCTCAAAGCTAGCAATGTTCTATTAGACCATGAGATGAATCCCAAGATATCAGATTTTGGATTGGCCAGGGCATTTGAAATAGGACAGAACCAAGCAAATACAAAACGAGTAGTGGGCACCTATGGATACATGGCTCCAGAGTATGCTATGGAAGGATTATTTTCCGTGAAAACGGATGTTTTCAGCTTTGGAGTTATTGTCCTAGAAATCATTTGTGGAAGAAAGAACAGTGGATTCCATCGATCAGAACATGGTCAAAGTCTTCTTTTATATGCTTGGAACATATGGTGTGAAGGAAGATGTTTGGAATTGATTGATCAAGCATTGATAAAATCCTTCGTAGCCAGTGAGGTTGTGAAGTGCATACACGTTGGTTTGCTTTGTGTTCAACAAGATGCAGCAGATAGGCCAACCATGTCCACGGTTGTTCTAATGCTAGGAAGTGACACAATGACCCTTCCAAACCTAATCCACCCTGCATTTCTCCGTTGGAAGATTGACCTCTATGAAAGATAA 2037 0.404 MRIKAEISMIPTGISLSFMFLLFTTASAQPPIYMYNFCENSTLSSSYKDNVETLLSWLTTDSFKSNGYNFTTVNSNNNNNDDDVYGLYSCRYDITGYFCQFCITTAATELSRRCPNAVRAIIWYDVCIIRYSNQSFIGNVTLTPTWNITGPRIIKHSSESRKAEDSVQSLIWKATVETKKFWAVDEFDWVDNEKRYGWVQCDRGIKNDQCGECLHALLDIFPECCSTHAQWAVFGPSCGIRMDDEKFYQTSGAMEVQLYYASVSTASGTGKESEEFIFYTVSGDGGSSKSRKFIISFSVLGSVALLCFGVYCFWYRKRVRRGNLLQXVNTCLIFXKRLLSGPQIWIQKLVIVDKMMFDEETLHGDLPTIPLIAVLHSTNNFSEESKLGEGGFGPVYKGILPDGRQIAVKRLSKFSGQGTQEFKNEVMFIAKLQHRNLVRLLGCCLEEKENILVYEYMCNASLDSHLFGGDEKRNQLDWKLRFSIINGIAKGILYLHEDSRLKVIHRDLKASNVLLDHEMNPKISDFGLARAFEIGQNQANTKRVVGTYGYMAPEYAMEGLFSVKTDVFSFGVIVLEIICGRKNSGFHRSEHGQSLLLYAWNIWCEGRCLELIDQALIKSFVASEVVKCIHVGLLCVQQDAADRPTMSTVVLMLGSDTMTLPNLIHPAFLRWKIDLYER 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8049g00001 678 ProSiteProfiles Gnk2-homologous domain profile. 142 247 IPR002902 -
Vium8049g00001 678 Gene3D Transferase(Phosphotransferase) domain 1 457 660 - -
Vium8049g00001 678 Gene3D - 32 136 IPR038408 -
Vium8049g00001 678 Gene3D - 149 247 IPR038408 -
Vium8049g00001 678 SMART serkin_6 381 653 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8049g00001 678 Pfam Protein tyrosine and serine/threonine kinase 384 650 IPR001245 GO:0004672|GO:0006468
Vium8049g00001 678 Pfam Salt stress response/antifungal 38 134 IPR002902 -
Vium8049g00001 678 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 347 456 - -
Vium8049g00001 678 SUPERFAMILY Protein kinase-like (PK-like) 365 653 IPR011009 -
Vium8049g00001 678 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 131 661 - -
Vium8049g00001 678 ProSiteProfiles Gnk2-homologous domain profile. 29 136 IPR002902 -
Vium8049g00001 678 FunFam Uncharacterized protein 457 659 - -
Vium8049g00001 678 ProSiteProfiles Protein kinase domain profile. 381 668 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium8049g00001 678 Gene3D Phosphorylase Kinase; domain 1 347 456 - -
Vium8049g00001 678 FunFam Cysteine-rich receptor-like protein kinase 28 34 135 - -
Vium8049g00001 678 CDD STKc_IRAK 387 653 - -
Vium8049g00001 678 ProSitePatterns Serine/Threonine protein kinases active-site signature. 503 515 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8049g00001 Vium-Chr8049 2449 7843 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8049g00001 18 669 Receptor kinase-like Gene Family AT4G05200 41.818 8.37e-166 490
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vium8049g00001 PK_Tyr_Ser-Thr 4.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8049g00001 - - var:108339138 926.391