Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8047g00003 TCTTCTTCTTCTTCTTCTTCTTTCTCTTCTACAGCACGGCTTAAAAGACACGATGTTTTCATCAGTTTTAGAGGTGAGGACACGCGCAACAGCTTCACAAGCCATCTCTATGCAGCCTTTCAGCACAAGAACATCCAAGCCTTCATAGATAACAGGTTTCACAAAGGGGATATGATCTCTTCCTCTATTTTTGAAGCCATCAAACACTCCAACGTTTCTCTTGTTGTTCTCTCCAAGTACTATGCTTCCTCCACGTGGTGCTTGCGTGAACTCGCCAAAATACTTCAACTCAGGAAACGTGGAGGACACATTGTGATACCTGTTTTCTATAAGATTGACCCTTCCCATGTAAGGAAGCAGACAGGAACTTACGGAATGGCGTTTCAAAAATATAAAGAAGATGTCAAACAAAACATGGCCATGTTGCAGAAATGGAAAGCTGCTCTCACTGAAGTGGCAGATATAGTTGGGTGGGAATCAAAGAATTTTAGGACGGAGAATGAACTCATTCAGGAAATTGTCAAAGACGTTATGCAAAAACTAAACCATATGTATCCCACTGAAGTAAAAACACTTGTTGGAATTGATCAAAATCTTGCTCCTATTGAATCGTTATTAAGACTAAGGTCAAAAGAAGTTCGCATAATTGGAATTTGGGGAATGGGTGGACTAGGTAAGACAACCATTGCGAGAGCTTTATTTGACAAATTATCATCTCAATTTGAAGCTAGTTGCTTCTTGGCAAATGTAATGGCAGAACATGAAAAGCAAGGACTTGATTATTTGCGCAATAAACTTCTTTCTGAGATATTAGAAGATGTGAATCCCCGTATAAGCACTTCCAAAGTGAGATCTACGTTTGTTATGAAGAGGCTTAGACAGAAAAAGGTTTTGATAGTACTTGATGATGTGGACGATCCAAAGAAACTCGAAGATCTTGCTGCACAACATGATTGCTTGGGATCTGGGAGTAGGGTCATTGTCACTACAAGAGACAAGCATGTCCTTAGCAAAGGGGTAGATGCAATCTATGAGGTTAAGGGATTGTCCCTTGATCATGCTGTTAGGCTTTTTAGTTTAAAGGCCTTTGGGAAAACTTATCCTGAAAGGGGCTTTGAAATGCTGTCTAAACAGGCAGTTGATCATGCAAATGGAAATCCATTGGCTTTAAAAGTTTTAGGTTCAGTTCTCCATTCCAGAAATGAGCAGCAATGGGACAATGCTATGAGAAAATTCAAGAAGGTTCCTAATGCTGAAATTCAGAATGTCTTGAGATGGAGTTATGATGGATTAGATTATGAACAAAAGAACATGTTCCTGGACATTGCATGCTTTTTCCGAGGAGAAAATAAAGAAAATGTTATAAGGTTGCTCGACATTTGTGGTTTCTATGCATATATTGGTATAAAAATCCTTCTAGAAAAAGGTCTTATAACTTTTTCTGATGATGGTGACGTGTGTATGCATGAATTGATACAGGAAATGGGTTGGGAAATTGTTCATCAGGAATCTATCAAAGATCCTGGAAGTCGCAGCCGACTGTGGGATCTTAAAGAAGTCTATGATGTGTTGAAAAATAACAGGGGAACTGAAGCAGTTGAAGGCATAATCTTAGATGTGTCTCAAATAAGAGTCCTGCTGCTGAGCTGTGAGACTTTCTCAAGGATGATAAATATGAGATTTCTCAAATTCTATATGGGGAAGGGTAGAAAATGCAATTTGCATCTTCCTTCAGGTCTCCAATCCTTGCCTAATAAATTAATGTACCTACAATGGGATGGATACCCTTCCAAGTCTCTGCCATCAACTTTTTGTACTGAGAACCTTGTTGTGCTTTCCATGATGGAAAGCCACGTTGAGAAACTTTGGGATGGAACCAAGTGTCTTCCAAGCTTGAAAGAGATGAACCTCCATGCCAGCAAAAAGTTAACTAATCTCCCAGATTTATCTCAGGCACCAAATCTTGAAACTATAGATGTTTCTAATTGCACAAGTCTGTTTCATGTTCCCTTATCCATCCAATATGTCAATAAGCTTCTTCTGTTTAACTTGGAATCCTGCAAGAGTCTCAAGAGTCTTCCAAGAAACATTCACTTATCTTCTCTTGAAATGTTCATTCTCAGACGCTGTTCTAGTCTTGATGAGTTTTCATTGACTTCGGAGAACATGACACGCCTAGACTTGAGAGAAACAAAAATAGCAGATTTCCCAGAGTCTGTTTGGCAGCATCTGAACAAGCTTGTTTACTTGAATCTGGAATCCTGCAACAAACTCAAGAGTCTTACAAGCAAGATTCACTTAAAATCTCTTCAAAGACTCAATCTGAGAGATTGTTCAATTCTCGAAGAGTTTTCTGTGACTTCGGAGAGCATGGAATACTTGAATTTGAGAGGCACGTCAATAAGAGAATTGCCAACATCAGTTTGGCGCAATAACAAGCTTTATACTTTGGTTCTTCATTCCTGTAAAAAACTGGTGAACTTTCCTGAAAGACCAAAAGTTGAGGATTTACCTCTCGTATCCTCCTCTGAAAGGCCAAATATGGATGAACTTTGGACTTTGTCATCTTTAGCAGATTTATCACTAAAAGGAAGCACTGTTGAGAATTTACCTGCAAGCATCAAAGATCTTCCTAGTCTAAAAAAACTTACCTTGACTGAGTGCAAGAAACTGCGGTCATTACCAAGCCTTCCACCATCCTTGGAAGACTTATCCTTAGATGAAAGTAATATTGTGTGCTTACCTGTAAGTATCAAAGATCTTTCTCATTTGAGAAAACTTGCCCTAATTAACCACAAGAAGCTTTTGACTCCACAGGATCTTCCACCATTTTTGAAAGCTCCATTACTCACTGAAAGTAAAGTTGATCCACACCTTGTGAGCATGAAAGGTCTTTCTCAACTACAGATGTTTCCTCAGGTTAAGTGGAAAATGTTTCATTCTCTACCAGAGCTTCCACCATTCTTGGAAGAATTTTCACTAAGTGAAAGCAATATTAAGTTCATACCTGAAAGCATTAAAAATCTTTCACATATGAGGAAACTAGCCTTCACAAAGTGCACGAGGCTGCAGTATTTACCAGAGCTTCCACCAAATTTGGAAGATTTGTTTGTAAGTGGATGTGACATTGAAAGCTTGCCAACAAGCATCAGAGATCTAGTTCACTTGCGAAAGATCACCTTAATTGAGTGCAAGAAGCTCAAGGCTCTACCAGAGCTTCCACAGTGCCTGCAATCATTGTGTGCAGCTGACTGCACATCACTTAAGATTGTTCGAAGTACAAAGAATATCTTAATAGAAGATAGGTATACATTCTATTGGAATTGCATAAACTTAGACCAAAAGTCGCGCAACAACATCATTGCAGATGCACCCTTTGAGGCAGCTTTTACTTCTTTGAAAGAAAGAACACCTCTTGGTCCTCTTATTTCTATTTGTTTGCCAGGAACTGAAATCCCAGACTGGTTCAGCCACCAATCAACAAATTCTTCACTGGACATGGAAATTCCTCTTGAGTGGTTCGTTGACTCGATGTTCTTAGGATTTGCTCTGTGCCTTGTAATTGGTGGTTTCCAACGGAACAGTAATGAAGGGTATGATCCAGATATCAATTGTTATCACTTTGTAAAATCTGCCTCCTACTCTGACCCCAGTGTTCCCTTTCTTGGACATTGCACAACTGTAATGCAGGTCCCTAGAGGTTTTAATTCAGATCATATATTTATATGCTACTATCCCTCTTTTAATGCCTCCATATTACAAGATTTCAAGGATTTAAGCTTGTACTATGATGCCAATGACTTAAGACTCAGAGTAATCTTTAAATTCAAGGGTCCATCTCAAAGGTTGGACATTGTTAAGAAGTGCGGGGTCAGACCTCTTTTGATCGCAAATACTGAAAGGCTTCACATAGAAAGTGAACTGCAACCTGAATAG 3936 0.3915 SSSSSSSFSSTARLKRHDVFISFRGEDTRNSFTSHLYAAFQHKNIQAFIDNRFHKGDMISSSIFEAIKHSNVSLVVLSKYYASSTWCLRELAKILQLRKRGGHIVIPVFYKIDPSHVRKQTGTYGMAFQKYKEDVKQNMAMLQKWKAALTEVADIVGWESKNFRTENELIQEIVKDVMQKLNHMYPTEVKTLVGIDQNLAPIESLLRLRSKEVRIIGIWGMGGLGKTTIARALFDKLSSQFEASCFLANVMAEHEKQGLDYLRNKLLSEILEDVNPRISTSKVRSTFVMKRLRQKKVLIVLDDVDDPKKLEDLAAQHDCLGSGSRVIVTTRDKHVLSKGVDAIYEVKGLSLDHAVRLFSLKAFGKTYPERGFEMLSKQAVDHANGNPLALKVLGSVLHSRNEQQWDNAMRKFKKVPNAEIQNVLRWSYDGLDYEQKNMFLDIACFFRGENKENVIRLLDICGFYAYIGIKILLEKGLITFSDDGDVCMHELIQEMGWEIVHQESIKDPGSRSRLWDLKEVYDVLKNNRGTEAVEGIILDVSQIRVLLLSCETFSRMINMRFLKFYMGKGRKCNLHLPSGLQSLPNKLMYLQWDGYPSKSLPSTFCTENLVVLSMMESHVEKLWDGTKCLPSLKEMNLHASKKLTNLPDLSQAPNLETIDVSNCTSLFHVPLSIQYVNKLLLFNLESCKSLKSLPRNIHLSSLEMFILRRCSSLDEFSLTSENMTRLDLRETKIADFPESVWQHLNKLVYLNLESCNKLKSLTSKIHLKSLQRLNLRDCSILEEFSVTSESMEYLNLRGTSIRELPTSVWRNNKLYTLVLHSCKKLVNFPERPKVEDLPLVSSSERPNMDELWTLSSLADLSLKGSTVENLPASIKDLPSLKKLTLTECKKLRSLPSLPPSLEDLSLDESNIVCLPVSIKDLSHLRKLALINHKKLLTPQDLPPFLKAPLLTESKVDPHLVSMKGLSQLQMFPQVKWKMFHSLPELPPFLEEFSLSESNIKFIPESIKNLSHMRKLAFTKCTRLQYLPELPPNLEDLFVSGCDIESLPTSIRDLVHLRKITLIECKKLKALPELPQCLQSLCAADCTSLKIVRSTKNILIEDRYTFYWNCINLDQKSRNNIIADAPFEAAFTSLKERTPLGPLISICLPGTEIPDWFSHQSTNSSLDMEIPLEWFVDSMFLGFALCLVIGGFQRNSNEGYDPDINCYHFVKSASYSDPSVPFLGHCTTVMQVPRGFNSDHIFICYYPSFNASILQDFKDLSLYYDANDLRLRVIFKFKGPSQRLDIVKKCGVRPLLIANTERLHIESELQPE 1311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8047g00003 1311 Gene3D Ribonuclease Inhibitor 721 789 IPR032675 -
Vium8047g00003 1311 Gene3D Ribonuclease Inhibitor 516 720 IPR032675 -
Vium8047g00003 1311 Gene3D Ribonuclease Inhibitor 790 951 IPR032675 -
Vium8047g00003 1311 ProSiteProfiles TIR domain profile. 15 181 IPR000157 GO:0007165
Vium8047g00003 1311 Pfam NB-ARC domain 205 418 IPR002182 GO:0043531
Vium8047g00003 1311 Pfam Leucine Rich Repeat 608 627 IPR011713 -
Vium8047g00003 1311 Gene3D - 179 343 IPR027417 -
Vium8047g00003 1311 SMART till_3 16 155 IPR000157 GO:0007165
Vium8047g00003 1311 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 180 442 IPR027417 -
Vium8047g00003 1311 Pfam TIR domain 17 192 IPR000157 GO:0007165
Vium8047g00003 1311 FunFam Disease resistance protein RPS4 530 721 - -
Vium8047g00003 1311 SUPERFAMILY L domain-like 532 829 - -
Vium8047g00003 1311 Gene3D - 14 178 IPR035897 -
Vium8047g00003 1311 PRINTS Disease resistance protein signature 215 230 - -
Vium8047g00003 1311 PRINTS Disease resistance protein signature 291 305 - -
Vium8047g00003 1311 PRINTS Disease resistance protein signature 875 891 - -
Vium8047g00003 1311 PRINTS Disease resistance protein signature 383 397 - -
Vium8047g00003 1311 Gene3D Ribonuclease Inhibitor 953 1098 IPR032675 -
Vium8047g00003 1311 Gene3D - 349 432 IPR042197 -
Vium8047g00003 1311 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 158 IPR035897 -
Vium8047g00003 1311 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 717 IPR044974 GO:0006952
Vium8047g00003 1311 SUPERFAMILY "Winged helix" DNA-binding domain 419 525 IPR036390 -
Vium8047g00003 1311 Pfam C-JID domain 1147 1292 IPR045344 -
Vium8047g00003 1311 SUPERFAMILY L domain-like 792 1120 - -
Vium8047g00003 1311 FunFam Disease resistance protein (TIR-NBS-LRR class) 13 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8047g00003 Vium-Chr8047 17917 22439 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8047g00003 8 868 WRKY Transcription Factor Family AT4G12020 35.261 1.78e-125 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8047g00003 - - gmx:100797269 2147.47