Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8047g00002 ATGCAAAAACTAAACCATATGTATCCCACTGAAGTAAAAACACTTGTTGGAATTGATCAAAATCTTGCTCCTATTGAATCGTTATTAAGACTAAGGTCAAAAGAAGTTCGCATAATTGGAATTTGGGGAATGGGTGGACTAGGTAAGACAACCATTGCGAGAGCTTTATTTGACAAATTATCATCTCAATTTGAAGCTAGTTGCTTCTTGGCAAATGTAATGGCAGAACATGAAAAGCAAGGACTTGATTATTTGCGCAATAAACTTCTTTCTGAGATATTAGAAGATGTGAATCCCCGTATAAGCACTTCCAAAGTGAGATCTACGTTTGTTATGAAGAGGCTTAGACAGAAAAAGGTTTTGATAGTACTTGATGATGTGGACGATCCAAAGAAACTCGAAGATCTTGCTGCACAACATGATTGCTTGGGATCTGGGAGTAGGGTCATTGTCACTACAAGAGACAAGCATGTCCTTAGCAAAGGGGTAGATGCAATCTATGAGGTTAAGGGATTGTCCCTTGATCATGCTGTTAGGCTTTTTAGTTTAAAGGCCTTTGGGAAAACTTATCCTGAAAGGGGCTTTGAAATGCTGTCTAAACAGGCAGTTGATCATGCAAATGGAAATCCATTGGCTTTAAAAGTTTTAGGTTCAGTTCTCCATTCCAGAAATGAGCAGCAATGGGACAATGCTATGAGAAAATTCAAGAAGGTTCCTAATGCTGAAATTCAGAATGTCTTGAGATGGAGTTATGATGGATTAGATTATGAACAAAAGAACATGTTCCTGGACATTGCATGCTTTTTCCGAGGAGAAAATAAAGAAAATGTTATAAGGTTGCTCGACATTTGTGGATTCTATGCATATATTGGTATAAAAATCCTTCTAGAAAAAGGTCTTATAACTTTTTCTGATGATGGTGACGTGTGTATGCATGAATTGATACAGGAAATGGGTTGGGAAATTGTTCATCAGGAATCTATCAAAGATCCTGGAAGTCGCAGCCGACTGTGGGATCTTAAAGAAGTCTATGATGTGTTGAAAAATAACAGGGGAACTGAAGCAGTTGAAGGCATAATCTTAGATGTGTCTCAAATAAGAGTCCTGCTGCTGAGCTGTGAGACTTTCTCAAGGATGATAAATATGAGATTTCTCAAATTCTATATGGGGAAGGGTAGAAAATGCAATTTGCATCTTCCTTCAGGTCTCCAATCCTTGCCTAATAAATTAATGTACCTACAATGGGATGGATACCCTTCCAAGTCTCTGCCATCAACTTTTTGTACTGAGAACCTTGTTGTGCTTTCCATGATGGAAAGCCACGTTGAGAAACTTTGGGATGGAACCAAGTGTCTTCCAAGCTTGAAAGAGATGAACCTCCATGCCAGCAAAAAGTTAACCAATCTCCCAGATTTATCTCAGGCACCAAATCTTGAAACTATAGATGTTTCTAATTGCACAAGTCTGATTCATGTTCCCTTATCCATCCAATATGTCAATAAGCTTCTTCTGTTTAACTTGGAATCCTGCAAGAGTCTCAAGAGTCTTCCAAGAAACATTCACTTATCTTCTCTTGAAATGTTCATTCTCAGACGCTGTACTAGTCTTGATGAGTTTTCATTGACTTCGGAGAACATGACACGCCTAGACTTGAGAGAAACAAAAATAGCAGATTTCCCAGAGTCTGTTTGGCAGCATCTGAACAAGCTTGTTTACTTGAATCTGGAATCCTGCAACAAACTCAAGAGTCTTACAAGCAAGATTCACTTAAAATCTCTTCAAAGACTCAATCTGAGAGATTGTTCAATTCTCGAAGAGTTTTCTGTGACTTCGGAGAGCATGGAATACTTGAATTTGAGAGGCACGTCAATAAGAGAATTGCCAACATCAGTTTGGCGCAATAACAAGCTTTATACTTTGGTTCTTCATTCCTGTAAAAAACTGGTGAACTTTCCTGAAAGACCAAAAGTTGAGGATTTACCTCTCGTATCCTCCTCTGAAAGGCCAAATATGGATGAACTATGGACTTTGTCATCCTTAGCAGATTTATCACTAAAAGGAAGCACTGTTGAGAATTTACCTGCAAGCATCAAAGATCTTCCTAGTCTAAAAAAACTTACCTTGACTGAGTGCAAGAAACTGCGGTCATTACCAAGCCTTCCACCATCCTTGGAAGACTTATCCTTAGATGAAAGTAATATTGTGTGCTTACCTGTAAGTATCAAAGATCTTTCTCATTTGAGAAAACTTGCCCTAATTAACCACAAGAAGCTTTTGACTCCACAGGATCTTCCACCATCTTTGAAAGCTCCATTACTCACTGAAAGTAAAGTTGATCCACACCTTGTGAGCATGAAAGGTCTTTCTCAACTACAGATGTTTCCTCAGGTTAAGTGGAAAATGTTTCATTCTCTACCAGAGCTTCCACCATTCTTGGAAGAATTTTCACTAAGTGAAAGCAATATTAAGTTCATACCTGAAAGCATTAAAAATCTTTCACATATGAGGAAACTAGCCTTCACAAAGTGCACGAGGCTGCAGTATTTACCAGAGCTTCCACCAAATTTGGAAGATTTGTTTGTAAGTGGATGTGACATTGAAAGCTTGCCAACAAGCATCAGAGATCTAGTTCACTTGCGAAAGATCACCTTAATTGAGTGCAAGAAGCTCAAGGCTCTACCAGAGCTTCCACAGTGCCTGCAATCATTGTGTGCAGCTGACTGCACATCACTTAAGATTGTTCGAAGTACAAAGAATATCTTAATAGAAGATAGGTATACATTCTATTGGAATTGCATAAACTTAGACCAAAAGTCGCGCAACAACATCATTGCAGATGCACCCTTTGAGGCAGCTTTTACTTCTTTGAAAGAAAGAACACCTCTTGGTCCTCTTATTTCTATTTGTTTGCCAGGAACTGAAATCCCAGACTGGTTCAGCCACCAATCAACAAATTCTTCACTGGACATGGAAATTCCTCTTGAGTGGTTCGTTGACTCGATGTTCTTAGGATTTGCTCTGTGCCTTGTAATTGGTGGTTTCCAACGGAACAGTAATGAAGGGTATGATCCAGATATCAATTGTTATCACTTTGTAAAATCTGCCTCCTACTCTGACCCCAGTGTTCCCTTTCTTGGACATTGCACAACTGTAATGCAGGTCCCTAGAGGTTTTAATTCAGATCATATATTTATATGCTACTATCCCTCTTTTAATGCCTCCATATTACAAGATTTCAAGGATTTAAGCTTGTACTATGATGCCAATGACTTAAGACTCAGAGTAATCTTTAAATTCAAGGGTCCATCTCAAAGGTTGGACATTGTTAAGAAGTGCGGGGTCAGACCTCTTTTGATCGCAAATACTGAAAGGCTTCACATAGAAAGTGAACTGCAACCTGAATAG 3405 0.388 MQKLNHMYPTEVKTLVGIDQNLAPIESLLRLRSKEVRIIGIWGMGGLGKTTIARALFDKLSSQFEASCFLANVMAEHEKQGLDYLRNKLLSEILEDVNPRISTSKVRSTFVMKRLRQKKVLIVLDDVDDPKKLEDLAAQHDCLGSGSRVIVTTRDKHVLSKGVDAIYEVKGLSLDHAVRLFSLKAFGKTYPERGFEMLSKQAVDHANGNPLALKVLGSVLHSRNEQQWDNAMRKFKKVPNAEIQNVLRWSYDGLDYEQKNMFLDIACFFRGENKENVIRLLDICGFYAYIGIKILLEKGLITFSDDGDVCMHELIQEMGWEIVHQESIKDPGSRSRLWDLKEVYDVLKNNRGTEAVEGIILDVSQIRVLLLSCETFSRMINMRFLKFYMGKGRKCNLHLPSGLQSLPNKLMYLQWDGYPSKSLPSTFCTENLVVLSMMESHVEKLWDGTKCLPSLKEMNLHASKKLTNLPDLSQAPNLETIDVSNCTSLIHVPLSIQYVNKLLLFNLESCKSLKSLPRNIHLSSLEMFILRRCTSLDEFSLTSENMTRLDLRETKIADFPESVWQHLNKLVYLNLESCNKLKSLTSKIHLKSLQRLNLRDCSILEEFSVTSESMEYLNLRGTSIRELPTSVWRNNKLYTLVLHSCKKLVNFPERPKVEDLPLVSSSERPNMDELWTLSSLADLSLKGSTVENLPASIKDLPSLKKLTLTECKKLRSLPSLPPSLEDLSLDESNIVCLPVSIKDLSHLRKLALINHKKLLTPQDLPPSLKAPLLTESKVDPHLVSMKGLSQLQMFPQVKWKMFHSLPELPPFLEEFSLSESNIKFIPESIKNLSHMRKLAFTKCTRLQYLPELPPNLEDLFVSGCDIESLPTSIRDLVHLRKITLIECKKLKALPELPQCLQSLCAADCTSLKIVRSTKNILIEDRYTFYWNCINLDQKSRNNIIADAPFEAAFTSLKERTPLGPLISICLPGTEIPDWFSHQSTNSSLDMEIPLEWFVDSMFLGFALCLVIGGFQRNSNEGYDPDINCYHFVKSASYSDPSVPFLGHCTTVMQVPRGFNSDHIFICYYPSFNASILQDFKDLSLYYDANDLRLRVIFKFKGPSQRLDIVKKCGVRPLLIANTERLHIESELQPE 1134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8047g00002 1134 PRINTS Disease resistance protein signature 38 53 - -
Vium8047g00002 1134 PRINTS Disease resistance protein signature 206 220 - -
Vium8047g00002 1134 PRINTS Disease resistance protein signature 698 714 - -
Vium8047g00002 1134 PRINTS Disease resistance protein signature 114 128 - -
Vium8047g00002 1134 Gene3D Ribonuclease Inhibitor 544 723 IPR032675 -
Vium8047g00002 1134 Gene3D Ribonuclease Inhibitor 341 543 IPR032675 -
Vium8047g00002 1134 Gene3D Ribonuclease Inhibitor 724 921 IPR032675 -
Vium8047g00002 1134 FunFam Disease resistance protein RPS4 353 544 - -
Vium8047g00002 1134 SUPERFAMILY L domain-like 355 652 - -
Vium8047g00002 1134 Gene3D - 172 255 IPR042197 -
Vium8047g00002 1134 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 3 540 IPR044974 GO:0006952
Vium8047g00002 1134 Pfam NB-ARC domain 28 241 IPR002182 GO:0043531
Vium8047g00002 1134 Gene3D - 2 166 IPR027417 -
Vium8047g00002 1134 Pfam C-JID domain 970 1115 IPR045344 -
Vium8047g00002 1134 Pfam Leucine Rich Repeat 431 450 IPR011713 -
Vium8047g00002 1134 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 4 265 IPR027417 -
Vium8047g00002 1134 SUPERFAMILY L domain-like 613 912 - -
Vium8047g00002 1134 SUPERFAMILY "Winged helix" DNA-binding domain 242 348 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8047g00002 Vium-Chr8047 13603 17893 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8047g00002 820 894 WRKY Transcription Factor Family AT4G12020 36.000 5.45e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8047g00002 - - gmx:100797269 1870.13