Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium803g00044 ATGCCTCAGCCATTGTTTCTGATTTTACTTTTATGTACATTGTTCTCAAGTGGTTTATCCCAAACGGTTTCCCTCCAAAGAGAGTCTCGAATTTTACTTCGGGTTAAGAACACCCAGCTTGAAGACAAAAACAAGAGTCTCCAAGACTGGGTACCAAACACAGACCACAACCCCTGCAACTGGACCGGCATTACCTGCGACGCACAAAACCAATCACTTGTCTCCATTGACCTCTCAGAAGTTGGAATCTACGGTGAGTTCCCCTTCGGTTTTTGTCGCATTCACACCCTCCAAAACCTCTCTCTCGCATTCAATTTTCTCTCCAATTCTGTCTCCCCCAACTCCCTGCTCCTCTGTTCCCACCTCCGTCTCTTGAACCTCTCCGACAATTTATTCGTTGGAGACCTGCCGGAATTCACGCCGGAGTTCACCGAACTACGGGTGTTAGACCTTTCGAAAAACAACTTCACTGGCAACATTCCGGGGAGTTTTGGACAGATTCCACGTCTGAGTGTGCTAGTTTTATGCGGAAACCTTCTGAGCGGAACGATCCCTCCCTCTTTAGGCAATCTCANTGAGTTAACTCGTTTGGAACTAGCTTATAACCCCTTCAGACCAGGACCGTTGCCTCCCCAACTAGGAAACCTAATTAGTCTTGAAACACTGTTCCTCGCTGCTGTTAACCTCGTAGGGGAAATTCCACACACTATCGGAAACCTCACCTCGCTCAAAAACTTGGACTTATCAAAAAATGGTTTGTCTGGTAATATCCCAAACAGCATTTCAGGTCTGAAAAACGTTGAACAAATTGAACTATTTGAAAACCAGCTTTCCGGTGAATTACCCCAAGGTTTAGGAAACCTCAGTAGTTTAATTCTCTTGGACCTCTCTCAGAACGCTCTGACCGGGGAACTACCACATGCAATCGCCTCTTTGCGTCTGTATTCTCTCAACTTAAATGACAACCTTCTCGGCGGGGAAATTCCTGAAAGTTTAGCTTCAAATCCCAACCTGCATCAGCTGAAACTCTTCAACAACAGCTTCACCGGGAAACTTCCACAAGATCTGGGACAAAACTCAGACATACAGGAATTCGATGTCTCGACGAATGACTTCGTGGGAGAGTTGCCAAAGTACCTCTGCAAAAGAAACAAACTCGAGCGTCTTATCACGTTCGCGAATCGCTTCTCAGGAACGCTCCCTGAGCAATACGGGGAGTGTGATTCACTTCAGTATGTCAGAATCCAGAACAACCAGTTATCAGGCCAGGTGCCTCCAGCTTTTTGGGCCCTTACAGGACTTCAGTTTCTTGAAATGTCCAACAACAGGTTTGAAGGTTCTGTCTCTGCTTCCATCTCTGCGGCATTCACCAAACTCATTTTGTCTGCTAACGATTTTTCTGGCAAATTCCCAACGCGAATCTGCCAACTCCCTCACCTTCTGGAGATTGACGTCAGCAAGAACCGCTTCACCGGTGAAGTTCCCACGTGCATAACTGGGTTGAAAAAGTTACAGAAACTTAAGATGCAAGAGAACATGTTCACTGGCGAAATACCCAGTAATGTGGCCCTCTGGAACGACATGACAGAGTTGAACCTGTCATTTAACCGATTTTCGGGTTCAATCCCGCGAGAACTTGGCAGTTTACACGATTTGACAAACCTTGATCTCGCCAGTAATTCTTTAACGGGGGAGATTCCGGTGGAGTTGACGAACCTCAGACTCAACCAGTTCAACGTATCTGATAACAATCTTTACGGGGAGGTTCCTTCAGGTTTCAACCACCAAATGTACTTTTCCAGTCTAGAGGGAAACCCAGGTCTGTGCAGCGGCGTCATCAAAACCCTACCTCCTTGTTCAAAACGAAGGCCGTTTTCTCTGCTTGCGATTGTCGTTTTAGTTGCCTGCGCTTCGCTCCTTGTGGGGTCCATGTTGTGGTACCTGAAGAGCAAGACTCGCCGTAAATCCAAGCGCTCGTATTTGTCAACCGCGTTTCAGAGGGTTGGGTTCAATGAAGAAGAAATTATTTCAAACTTAACCCGGGAGAACGTGATTGGAGCAGGGAGTTCGGGTCGGGTCTATAGGGTGAAGCTGAAAACGGGGCACACGGTGGCAGTGAAGAAGCTGTTCGGCGGAGTACATAAGCCTGACACTGAATTGGTGTTCAGGGCGGAGATTGAGACGTTGGGCAGGATTCGGCATGCCAATATTGTGAAACTGTTGTTTTGTTGCAGTGATGATGAGTTTAGGGTATTGGTGTACGAGTACATGGAGAACGGGAGCTTAGGGGATGTGTTGCATGGTGAGGAAATGTGTGGGGAGTTGATGGAGTGGTCTAGAAGGTTCGCAATTGCGGTGGGTGCGGCTAAGGGGTTGGCTTATTTGCACCATGATTGTGTGCCGCCAATTGTTCACAGGGACGTGAAGAGTAATAACATTTTGCTGGACCACGAGTTTGTGCCAAGAGTTGCAGACTTTGGCCTCGCTAAGACATTGCAGCTTGAGACAACCCAGGATGCTGTTATGTCCAAGGTTGCTGGATCATATGGCTACATTGCTCCAGAGTATGCTTATACAATGAAAGTGAACGAGAAGAGCGATGTGTATAGTTTTGGGGTTGTGCTGATGGAATTGGTAACCGGGAAGAGGCCAAATGACTCTTCATTTGGTGAGAACAAGGATGTAGTGAAATGGATGACTGAGATTGTTTTATCAACGTCCTCTGAAAGAGGAAGTGGCAATGTGGGAAGAGGTAAAGAGTATATTATGACCAAGATTGTGGACCCAAGATTGAACCGAAGCACTTGTGACTATGAAGAGGTTGAGAAGGTTTTAAATGTGGCCCTACTCTGCACCTCAGCATTTCCCATTAATAGACCTTCCATGAGAAGGGTGGTTGAATTGCTCAAGGACCATAAACTGCCATGA 2928 0.4676 MPQPLFLILLLCTLFSSGLSQTVSLQRESRILLRVKNTQLEDKNKSLQDWVPNTDHNPCNWTGITCDAQNQSLVSIDLSEVGIYGEFPFGFCRIHTLQNLSLAFNFLSNSVSPNSLLLCSHLRLLNLSDNLFVGDLPEFTPEFTELRVLDLSKNNFTGNIPGSFGQIPRLSVLVLCGNLLSGTIPPSLGNLXELTRLELAYNPFRPGPLPPQLGNLISLETLFLAAVNLVGEIPHTIGNLTSLKNLDLSKNGLSGNIPNSISGLKNVEQIELFENQLSGELPQGLGNLSSLILLDLSQNALTGELPHAIASLRLYSLNLNDNLLGGEIPESLASNPNLHQLKLFNNSFTGKLPQDLGQNSDIQEFDVSTNDFVGELPKYLCKRNKLERLITFANRFSGTLPEQYGECDSLQYVRIQNNQLSGQVPPAFWALTGLQFLEMSNNRFEGSVSASISAAFTKLILSANDFSGKFPTRICQLPHLLEIDVSKNRFTGEVPTCITGLKKLQKLKMQENMFTGEIPSNVALWNDMTELNLSFNRFSGSIPRELGSLHDLTNLDLASNSLTGEIPVELTNLRLNQFNVSDNNLYGEVPSGFNHQMYFSSLEGNPGLCSGVIKTLPPCSKRRPFSLLAIVVLVACASLLVGSMLWYLKSKTRRKSKRSYLSTAFQRVGFNEEEIISNLTRENVIGAGSSGRVYRVKLKTGHTVAVKKLFGGVHKPDTELVFRAEIETLGRIRHANIVKLLFCCSDDEFRVLVYEYMENGSLGDVLHGEEMCGELMEWSRRFAIAVGAAKGLAYLHHDCVPPIVHRDVKSNNILLDHEFVPRVADFGLAKTLQLETTQDAVMSKVAGSYGYIAPEYAYTMKVNEKSDVYSFGVVLMELVTGKRPNDSSFGENKDVVKWMTEIVLSTSSERGSGNVGRGKEYIMTKIVDPRLNRSTCDYEEVEKVLNVALLCTSAFPINRPSMRRVVELLKDHKLP 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium803g00044 975 Gene3D Ribonuclease Inhibitor 179 284 IPR032675 -
Vium803g00044 975 Gene3D Ribonuclease Inhibitor 24 178 IPR032675 -
Vium803g00044 975 ProSitePatterns Serine/Threonine protein kinases active-site signature. 803 815 IPR008271 GO:0004672|GO:0006468
Vium803g00044 975 Pfam Leucine rich repeat 218 277 IPR001611 GO:0005515
Vium803g00044 975 Pfam Leucine rich repeat 145 203 IPR001611 GO:0005515
Vium803g00044 975 SMART serkin_6 679 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium803g00044 975 Gene3D Ribonuclease Inhibitor 293 622 IPR032675 -
Vium803g00044 975 Gene3D Transferase(Phosphotransferase) domain 1 757 974 - -
Vium803g00044 975 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 194 970 - -
Vium803g00044 975 FunFam Leucine-rich receptor-like protein kinase family protein 209 307 - -
Vium803g00044 975 SUPERFAMILY Protein kinase-like (PK-like) 670 969 IPR011009 -
Vium803g00044 975 ProSitePatterns Protein kinases ATP-binding region signature. 685 708 IPR017441 GO:0005524
Vium803g00044 975 SUPERFAMILY RNI-like 352 609 - -
Vium803g00044 975 ProSiteProfiles Protein kinase domain profile. 679 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium803g00044 975 Pfam Leucine rich repeat N-terminal domain 28 67 IPR013210 -
Vium803g00044 975 Pfam Protein kinase domain 681 892 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium803g00044 975 FunFam Leucine-rich repeat receptor-like protein kinase 25 186 - -
Vium803g00044 975 SUPERFAMILY RNI-like 75 421 - -
Vium803g00044 975 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 757 974 - -
Vium803g00044 975 Gene3D Phosphorylase Kinase; domain 1 662 756 - -
Vium803g00044 975 FunFam Leucine-rich repeat receptor-like protein kinase TDR 309 621 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium803g00044 Vium-Chr803 365132 369619 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium803g00044 23 973 Receptor kinase-like Gene Family AT5G65710 56.952 0.0 1049
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium803g00044 Pkinase 3.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium803g00044 - - gmx:100813889 1564.67