Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium803g00043 ATGCGTGTTCTCTTTCTATTTCTGTTTTTCCATCTTCATCAAACCCTTTCGCTGCCATTCTCAGAGTACAATGCCCTTCGCTCTATTCGTTCAGCCATCACCGATGCCACTCCACCAGTTCTCTCTTCCTGGAATGCCTCCACCTCTTACTGTTCCTGGCTCGGCGTCACATGCGATTCGCACCGCCACGTCGTCGCTCTCAACCTCACCGGACTCCACCTCTCCGGGACTCTCTCCGCCGACATAGCTCACCTCCCATTCCTCTCCAATCTCTCGCTCGCCGAAAATAAGTTCTCCGGCCCCATCCCTCCGGCTCTCTCCTCCCTCTCTGCCCTCCGCCTCCTCAACCTCTCCAACAATGGCTTTAACCAAACTTTTCCCTCGGAGCTCTCGCGCCTCCAGACCCTCGAGGTCCTCGACCTCTACAACAACAACATGACCGGCGCACTCCCTCTGGCCGTCGCGCAGATGCTTAACCTCCGCCACTTGCATCTCGGCGGGAACTTCTTCTCCGGCCGGATCCCTCCGGAGTACGGACAGTGGCCGCTCCTCGAGTACCTTGCTGTCTCCGGCAACGAGCTCGGCGGGAAAATACCGCCGGAGATCGGGAACCTGACCAGCCTTCGGGAGCTCTACCTCGGCTACTACAACACCTACGTGGACAGCATTCCGCCGGAGATCGGGAACTTGTCAGAGTTGGTGAGGCTGGACGCCGCGTACTGTGGTTTGTCTGGCGAGATTACACCGGCGCTGGGTAAGCTGCAGAAGCTGGACACGCTGTTCCTTCAGGTGAATGCGCTAACAGGGCCTCTGGCGCCGGAGCTGGGGAACCTGAAGAGCCTGAAATCGATGGATTTGTCTAACAACATGCTCTCTGGCGAGATTCCGGCGAGTTTCAGCGAGCTCAAGAATATTACGCTGCTGAACCTGTTCAGGAACAAGCTTCATGGAGCAATACCGGAGTTTATAGGGGACCTTCCGTCACTGGAAGTGGTGCAACTGTGGGAAAACAACTTCACAGGTAGCATTCCTGACGGTTTAGGCAAGAACGGGAGACTGAACGTTGTTGATCTTTCTTCTAACAAATTAACCGGGACTTTGCCTCCTTATCTCTGTTCTGGGAACACCCTTCGGACTTTGATAACTCTCGAGAATTTCTTGTTCGGTCCAATACCGGAATCGCTTGGGAGTTGTGAATCCCTTCTTCGGATTCGAATGGGAGAGAACTTTCTAAATGGGTCCATTCCGAAAGGGCTTTTTGGACTTCCCAAACTGACCCAGGTTGAGCTTCAGGATAATTATCTATCCGGAGAGTTTCCGGAGGCGGGCTCTGTAGCTGTTAATCTTGGTCAGATAACTCTCTCCAACAATCAGCTTTCTGGGTCTTTGCCTCCTTCTATTGGCAACTTCTCCGGCGTGCAGAAGCTCCTTCTTGACGGTAACATGTTTTCTGGTCGGATACCTCCTCAGATTGGGAAGTTGCAACAGCTCTCAAAGATTGATTTTAGTGGCAACAAGTTCTCGGGTCCTATTTCACCTGAGATCAGTCAGTGTAAGTTGTTGACTTTTCTGGACCTTAGCCGCAATGAGCTTTCCGGAGAGATCCCAAATGAGATTACTGGAATGAGGATCTTGAATTACCTTAATCTCTCAAGTAATCATTTAGTGGGTAGCATTCCCTCTTCAATATCCTCGATGCAAAGCTTAACTTCTGTTGATTTTTCGTACAACAATCTGTCTGGTTTGGTGCCTGGTACCGGTCAGTTCAGCTACTTCAACTACACGTCTTTCCTGGGAAACCCTGACCTCTGTGGTCCCTATTTAGGTGCTTGCAAGGATGGGGTTGCCAATGGTGCACATCAACCTCATGCCAAAGGACTCTCGTCTTCCTTGAAGCTTCTACTTGTTGTCGGTTTGCTTTTATGTTCCATTGCTTTTGCTGTGGCGGCAATATTTAAGGCTCGATCACTGAAGAAGGCCAGTGAGGCTCGTACATGGAAGTTGACTGCATTCCAACGTTTGGACTTCACTGTTGATGATGTTTTGCATTGCTTGAAGGAGGATAATATTATAGGCAAAGGAGGTGCAGGCATTGTCTACAAAGGGGCTATGCCTAACGGGGATCATGTTGCCGTGAAAAGGCTTCCCGCTATGAGTAGAGGCTCTTCCCACGACCACGGGTTCAATGCGGAGATTCAGACACTTGGTCGAATCCGACACAGGCACATTGTTAGACTGCTGGGTTTCTGTTCAAATCACGAGACTAACCTTTTGGTCTATGAGTACATGCCCAATGGAAGCTTGGGTGAGGTTCTTCATGGAAAGAAGGGAGGTCATTTGTATTGGGACATAAGGTATAAAATTGCCGTGGAAGCTGCCAAAGGGCTTTGCTATCTGCACCATGATTGTTCTCCGCTCATTGTTCACCGTGATGTGAAGTCAAACAACATCCTTCTTGATTCTAATCATGAAGCCCATGTTGCTGATTTTGGGCTAGCCAAGTTCCTGCAAGATTCTGGAACATCTGAATGCATGTCTGCTATTGCTGGTTCATATGGATACATAGCTCCGGAGTATGCCTACACATTGAAAGTTGATGAGAAAAGCGACGTGTACAGTTTTGGCGTGGTTCTTTTAGAACTTGTAACTGGCAGGAAACCTGTTGGGGAATTTGGTGACGGTGTAGACATTGTGCAATGGACAAGGAAAATGACGGACTCTAGCAAGGAAGAAGTTCTTAAAGTTCTTGATCCTAGGCTTTCCTCGGTTCCCCTCCACGAAGTGATGCATGTTTTCTATGTAGCCATGTTATGTGTTGAAGAACAGGCTGTAGAGAGACCAACTATGCGTGAAGTAGTCCAAATGCTAACAGAGCTTCCAAAGCCACCTGGTTCTAAACAGGAGGACTTAACAGAATCCTCTCTGACATCATCCAATGCTTTAGAATCTCCATCCACAGCCTCTAAAGATCATCAGAATCCTTCTCAATCTCCACCAGCCGATCTTCTTAGCATCTGA 3018 0.493 MRVLFLFLFFHLHQTLSLPFSEYNALRSIRSAITDATPPVLSSWNASTSYCSWLGVTCDSHRHVVALNLTGLHLSGTLSADIAHLPFLSNLSLAENKFSGPIPPALSSLSALRLLNLSNNGFNQTFPSELSRLQTLEVLDLYNNNMTGALPLAVAQMLNLRHLHLGGNFFSGRIPPEYGQWPLLEYLAVSGNELGGKIPPEIGNLTSLRELYLGYYNTYVDSIPPEIGNLSELVRLDAAYCGLSGEITPALGKLQKLDTLFLQVNALTGPLAPELGNLKSLKSMDLSNNMLSGEIPASFSELKNITLLNLFRNKLHGAIPEFIGDLPSLEVVQLWENNFTGSIPDGLGKNGRLNVVDLSSNKLTGTLPPYLCSGNTLRTLITLENFLFGPIPESLGSCESLLRIRMGENFLNGSIPKGLFGLPKLTQVELQDNYLSGEFPEAGSVAVNLGQITLSNNQLSGSLPPSIGNFSGVQKLLLDGNMFSGRIPPQIGKLQQLSKIDFSGNKFSGPISPEISQCKLLTFLDLSRNELSGEIPNEITGMRILNYLNLSSNHLVGSIPSSISSMQSLTSVDFSYNNLSGLVPGTGQFSYFNYTSFLGNPDLCGPYLGACKDGVANGAHQPHAKGLSSSLKLLLVVGLLLCSIAFAVAAIFKARSLKKASEARTWKLTAFQRLDFTVDDVLHCLKEDNIIGKGGAGIVYKGAMPNGDHVAVKRLPAMSRGSSHDHGFNAEIQTLGRIRHRHIVRLLGFCSNHETNLLVYEYMPNGSLGEVLHGKKGGHLYWDIRYKIAVEAAKGLCYLHHDCSPLIVHRDVKSNNILLDSNHEAHVADFGLAKFLQDSGTSECMSAIAGSYGYIAPEYAYTLKVDEKSDVYSFGVVLLELVTGRKPVGEFGDGVDIVQWTRKMTDSSKEEVLKVLDPRLSSVPLHEVMHVFYVAMLCVEEQAVERPTMREVVQMLTELPKPPGSKQEDLTESSLTSSNALESPSTASKDHQNPSQSPPADLLSI 1005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium803g00043 1005 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 763 973 - -
Vium803g00043 1005 SUPERFAMILY Protein kinase-like (PK-like) 680 956 IPR011009 -
Vium803g00043 1005 Pfam Protein tyrosine and serine/threonine kinase 687 956 IPR001245 GO:0004672|GO:0006468
Vium803g00043 1005 MobiDBLite consensus disorder prediction 967 1005 - -
Vium803g00043 1005 SMART serkin_6 685 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium803g00043 1005 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 654 762 - -
Vium803g00043 1005 MobiDBLite consensus disorder prediction 958 1005 - -
Vium803g00043 1005 SUPERFAMILY L domain-like 351 608 - -
Vium803g00043 1005 SMART LRR_typ_2 205 230 IPR003591 -
Vium803g00043 1005 SMART LRR_typ_2 326 350 IPR003591 -
Vium803g00043 1005 SMART LRR_typ_2 157 181 IPR003591 -
Vium803g00043 1005 SMART LRR_typ_2 278 302 IPR003591 -
Vium803g00043 1005 SMART LRR_typ_2 109 133 IPR003591 -
Vium803g00043 1005 SMART LRR_typ_2 566 589 IPR003591 -
Vium803g00043 1005 SMART LRR_typ_2 351 374 IPR003591 -
Vium803g00043 1005 SUPERFAMILY RNI-like 67 387 - -
Vium803g00043 1005 Gene3D Phosphorylase Kinase; domain 1 650 762 - -
Vium803g00043 1005 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 79 322 - -
Vium803g00043 1005 ProSitePatterns Serine/Threonine protein kinases active-site signature. 807 819 IPR008271 GO:0004672|GO:0006468
Vium803g00043 1005 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM3 330 615 - -
Vium803g00043 1005 Pfam Leucine Rich Repeat 159 176 IPR001611 GO:0005515
Vium803g00043 1005 Pfam Leucine Rich Repeat 280 302 IPR001611 GO:0005515
Vium803g00043 1005 Gene3D Ribonuclease Inhibitor 20 217 IPR032675 -
Vium803g00043 1005 Pfam Leucine rich repeat N-terminal domain 22 59 IPR013210 -
Vium803g00043 1005 Gene3D Ribonuclease Inhibitor 322 617 IPR032675 -
Vium803g00043 1005 Gene3D Transferase(Phosphotransferase) domain 1 763 979 - -
Vium803g00043 1005 Gene3D Ribonuclease Inhibitor 218 321 IPR032675 -
Vium803g00043 1005 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 222 957 - -
Vium803g00043 1005 ProSiteProfiles Protein kinase domain profile. 685 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium803g00043 Vium-Chr803 336130 340364 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium803g00043 15 984 Receptor kinase-like Gene Family AT5G65700 80.632 0.0 1588
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vium803g00043 PK_Tyr_Ser-Thr 1.1e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium803g00043 - - gmx:548032 1802.33