Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium803g00042 ATGGGATACATTTTCACACGTGCTCCTATTGACCCGAGTATGAAGCGTGTGCGCTGCCCCCTTTATAAAACCTTCCCAACAACATCGTTTTTCTCATCTCCCAACTTCACAGCCTTAATCTCTTCTCTTCAATCTCCACCCTCTCCACCGCTTTTCGAATTTTCCATTCAAGGCCTCTATAAACGAAGGAAGCTGAAGATGATGGAAATCGCGTCCACCAATTACTTGCCTGAACTTGAAATGGAGTATCCAACCTTTCTTGATCAGTACCAGATGGATTCTTTTGCATGCCCACTGGATGACTTTGACTTCGAGTCTTTCTCCGGATCCCCTGAGAGCAATTCAACTTATCGGCTAAACTCCGAAACCACTCTAAATAATTTCCCAGCTCAAAGTTCTGATCAGTCATTTACCCCTCCAAGACCAACCAAGAGGCTCAAGAACACATTCAATACCTTCAAAACTTGTGCGGGTGACTCAATTCCCCACAATGTTTCCGCTTCTCCTTCCTCCCAATTCATTTCTTTTGGCCACTTTAATGCTTCACCACGTGCTTCCCAGCAATTTCACAACTTCCATGTGAAGCCTAAAAGCGAAAACCCGTCCAGTGAGCACATGGACTTTACAGACTTCGTTTCTCAAGGTTCATATCAGGACAAAACTTTTTTCAGTTCTGATAATCGAACGAACCAGGTTGGCTTAACCACTAGGAACCCTATCCAAGCCCAAGAGCACGTAATAGCTGAAAGAAAACGAAGGGAAAAGCTCAGCCAGAGGTTCATCGCTCTTTCTGCCGTCCTCCCTGGCCTCAAGAAGATGGACAAGGCTTCTGTGTTGGGAGATGCTATCAAGTATGTGAAACAACTACGAGAGCGCGTGAAAAATCTAGAGGAGAAATCAGCGAAGACCACAACCGGTTCTTCAGTCCTGGTGAAAAGATCTATTCTCTTTGCTGACGGTGAAAATTCTGACAGCCACTGCGCCAATTCACTCCCTGAAATCGAAGTAAGAGTTTCTGGGAAAGACGTGCTCATCAGAACTCAGAGCGATAAACACAGTGGGCGTGCGGCAGTGATACTCAGTGAATTAGAAAAGCTTCAGTTCATTGTCCAGAGTAGCAGCCTTTTGCCCTTCGGCAATAACAATATTGACGTAACTATTATTGCTCAGATGAAGGAAAACTACATGGCAGCAAAGGATCTCCTGGGAAGGTTACGAAAGGCTTTGAAGCAAGTTGATGGAGCCTAA 1248 0.4511 MGYIFTRAPIDPSMKRVRCPLYKTFPTTSFFSSPNFTALISSLQSPPSPPLFEFSIQGLYKRRKLKMMEIASTNYLPELEMEYPTFLDQYQMDSFACPLDDFDFESFSGSPESNSTYRLNSETTLNNFPAQSSDQSFTPPRPTKRLKNTFNTFKTCAGDSIPHNVSASPSSQFISFGHFNASPRASQQFHNFHVKPKSENPSSEHMDFTDFVSQGSYQDKTFFSSDNRTNQVGLTTRNPIQAQEHVIAERKRREKLSQRFIALSAVLPGLKKMDKASVLGDAIKYVKQLRERVKNLEEKSAKTTTGSSVLVKRSILFADGENSDSHCANSLPEIEVRVSGKDVLIRTQSDKHSGRAAVILSELEKLQFIVQSSSLLPFGNNNIDVTIIAQMKENYMAAKDLLGRLRKALKQVDGA 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium803g00042 415 Coils Coil 279 306 - -
Vium803g00042 415 Gene3D - 235 305 IPR036638 GO:0046983
Vium803g00042 415 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 240 289 IPR011598 GO:0046983
Vium803g00042 415 SMART finulus 246 295 IPR011598 GO:0046983
Vium803g00042 415 PANTHER BHLH TRANSCRIPTION FACTOR 81 409 - -
Vium803g00042 415 CDD bHLH_AtNAI1_like 242 314 - -
Vium803g00042 415 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 244 305 IPR036638 GO:0046983
Vium803g00042 415 Pfam Helix-loop-helix DNA-binding domain 243 290 IPR011598 GO:0046983
Vium803g00042 415 Coils Coil 388 408 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium803g00042 Vium-Chr803 316903 319342 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium803g00042 68 409 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 36.723 3.14e-55 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium803g00042 HLH 5.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium803g00042 - - var:108334767 791.956