Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium803g00041 ATGGACTCATCAGAACCCAGCTGGTTTTTGGATTTCGAAACTGAGGATTGCACCATGTTCCGACAATGTCTTGAAGATGATCACGAGTTACTTTCCCTTGAGATAGCAAGTGCCCTAGAGAACTTGCCACTACCACAGCATCAGCAACCTTTGTCTTCGGAGAGTCACATGTTGTATTCCGAAACCACTAATTTCAACAGTTCCATCAAGCAGCCCAAAACGAATCTCTGCAGTTGGAACTCAACCCCCATTTCCACCAAACACTTTTCACCCAAACTTTCCTCCTCTTCCTCTTCCTCATCTTCACCACTCTCCCAGATTATGTTTCTAAACAACTCAAACTCGTTGTCTGTGGAGAACACTCAGTTTGAAGGGATTGTTTCTGCTGCGCTGAGCCCGCCGCAACAGAACAAAGGTGTTTCAGTTTCAATCCCAGAGAACGGAACAAGATCATCAAAAAATCTGAAAGACAAAGGAATCCGCAAGACTTCCGGTCACGGTCGGAATCACATCATCGCGGAAAGAAAACGGAGACAGAAAATGAGCCAGGGCTTAATTGCTCTTGCTGCTCTCATTCCAGGCTTAAAGAAGATGGACAAGGCTTCAGTGCTGGGAGACGCTGTCAGGTATGTGAAAGATCTTCAAGAGCGTCTGAAAAATCTTGAAGGAAAGAACAAGAAGAAGAGAGATGAGAAGTCTGAGGTGGTGATGGTGAAGAAGCCACGGCTGAGCTACCACGATGGTTCGGCTTCAGGCGACGGTGATGGGTGTTTTAGGGAAAGCCTCCCTCGCGTGGAAGCACGAGTGTCAGAGAAGGATGTGCTCCTTCGCATCCACTGCGAAAAGCGAAAAGGTCTTTTGCTGAAAATGCTTGTGGAGATTCAAAACCTTCATCTCTTTGTTGTGAATAGCAGTGTCCTGCGTTTTGGAGATTCCATCCTTGATATCACAATTGTTGCTCAGATGGGGACGGAGTACAACTTGACTATAAATGACCTTGTAAAGAACCTCCGCATGGCTACTTTGAAATCCACGTGA 1038 0.4624 MDSSEPSWFLDFETEDCTMFRQCLEDDHELLSLEIASALENLPLPQHQQPLSSESHMLYSETTNFNSSIKQPKTNLCSWNSTPISTKHFSPKLSSSSSSSSSPLSQIMFLNNSNSLSVENTQFEGIVSAALSPPQQNKGVSVSIPENGTRSSKNLKDKGIRKTSGHGRNHIIAERKRRQKMSQGLIALAALIPGLKKMDKASVLGDAVRYVKDLQERLKNLEGKNKKKRDEKSEVVMVKKPRLSYHDGSASGDGDGCFRESLPRVEARVSEKDVLLRIHCEKRKGLLLKMLVEIQNLHLFVVNSSVLRFGDSILDITIVAQMGTEYNLTINDLVKNLRMATLKST 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium803g00041 345 MobiDBLite consensus disorder prediction 134 169 - -
Vium803g00041 345 Pfam Helix-loop-helix DNA-binding domain 169 215 IPR011598 GO:0046983
Vium803g00041 345 MobiDBLite consensus disorder prediction 151 169 - -
Vium803g00041 345 Coils Coil 21 41 - -
Vium803g00041 345 Gene3D - 157 231 IPR036638 GO:0046983
Vium803g00041 345 PANTHER BHLH TRANSCRIPTION FACTOR 50 343 - -
Vium803g00041 345 MobiDBLite consensus disorder prediction 134 150 - -
Vium803g00041 345 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 165 214 IPR011598 GO:0046983
Vium803g00041 345 Coils Coil 204 231 - -
Vium803g00041 345 SMART finulus 171 220 IPR011598 GO:0046983
Vium803g00041 345 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 168 229 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium803g00041 Vium-Chr803 300631 302348 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium803g00041 150 340 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 47.000 3.23e-52 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vium803g00041 HLH 5.7e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium803g00041 - - vun:114174269 489.574