Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium803g00038 ATGGCTGCAGAGATTGGCCTAGTCTCCATGACCCAGATCCAAAAATTATCACAATCCCAACACCCCAAAAAACAACAACCTCAACCAAACCCTAACATCACAACCACCACCCCCTCCTCTTGGATGTGGAACCCTAGCCAGCAACTGCACCACCAAGAAGACGACGATGACTCATGGGAGGTCAGAGCTTTTGCAGAAGACACAAGGAACATCATGGGAACCACATGGCCTCCACGCTCCTACACCTGCACATACTGCAGAAGGGAGTTCCGCTCCGCCCAAGCTCTCGGCGGCCACATGAACGTCCACCGCCGCGACCGTGCACGCCTCAACCAACACCCTCCTTCCTCCACCGCCATCTCTTCTCTTCCCACTTCTTCACCCTACATCAACATCCCTCCTCAAGACCTTGTTGCAAATGCTGGGTTATGCCTCCTCTACCACTTGCCACCAAGCCCTAGTGCACCACCCTTCTCTAATTCCCCCTCTACCAATACTCTTTCTTCTTCTCCCTCTCCCTCCACTCTTCTCTCTATCTCCTCCTATCCTTCAACCAACTTTCTGATGCAAACTTCCTTTAATTTTCCCGGTGCACCCTCGACTGGGATCAACACTGCTACTGTTTCCTCTTTCTACTCCAGCAAAGTGGAACAATCGGCAACTTCTTCCTCTTTTGCTGCCGGCCACCTCGAAGAGCTTGATCTAGAGCTCCGCCTCGGCCACAAACCAACACAAACCTCATAA 744 0.5215 MAAEIGLVSMTQIQKLSQSQHPKKQQPQPNPNITTTTPSSWMWNPSQQLHHQEDDDDSWEVRAFAEDTRNIMGTTWPPRSYTCTYCRREFRSAQALGGHMNVHRRDRARLNQHPPSSTAISSLPTSSPYINIPPQDLVANAGLCLLYHLPPSPSAPPFSNSPSTNTLSSSPSPSTLLSISSYPSTNFLMQTSFNFPGAPSTGINTATVSSFYSSKVEQSATSSSFAAGHLEELDLELRLGHKPTQTS 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium803g00038 247 Gene3D Classic Zinc Finger 72 124 - -
Vium803g00038 247 Pfam C2H2-type zinc finger 81 105 - -
Vium803g00038 247 PANTHER OS07G0101800 PROTEIN 53 243 - -
Vium803g00038 247 ProSitePatterns Zinc finger C2H2 type domain signature. 83 103 IPR013087 -
Vium803g00038 247 SMART c2h2final6 81 103 IPR013087 -
Vium803g00038 247 MobiDBLite consensus disorder prediction 14 48 - -
Vium803g00038 247 SUPERFAMILY beta-beta-alpha zinc fingers 78 108 IPR036236 -
Vium803g00038 247 MobiDBLite consensus disorder prediction 155 175 - -
Vium803g00038 247 ProSiteProfiles Zinc finger C2H2 type domain profile. 81 108 IPR013087 -
Vium803g00038 247 MobiDBLite consensus disorder prediction 159 175 - -
Vium803g00038 247 MobiDBLite consensus disorder prediction 14 56 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium803g00038 Vium-Chr803 268435 269889 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium803g00038 39 243 C2H2 Transcription Factor Family AT4G17810 40.777 4.24e-42 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vium803g00038 zf-C2H2_6 2.8e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium803g00038 - - gmx:100818142 309.301