Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium803g00037 ATGTCTATGGCTGGTTTGGATTTAGGCACGGCTTCGCGCTTCGTTCAAAGTCTCCAAAGACCAGACTTTAACCAACAACACCACCAGCACGAACCTCGGGAAGACGACAAACAGTCAGACCCTTTTTCGACCGAAGATGGGGCGCAACAAGCCAGCCCCGGCGACGTGGTCGGGCGGCGGCCGCGAGGGCGGCCGGCGGGATCGAAGAACAAGCCGAAGCCGCCGGTGATCATCACCAGGGAGAGCGCCAACACGCTCCGCGCGCACATCCTCGAGGTGGGCAGCGGCTGCGACGTGTTCGACAGCGTCGCCAGTTACGCGCGGCGGCGGCAACGCGGGATCTGTATTTTGAGCGGCAGCGGCACCGTGACGAATGTAACCCTGCGGCAGCCGGCGGCGTCGGGGGCGGTGGTGACTCTTCACGGGAGGTTCGAAATACTGTCGCTGACGGGATCGTTCCTTCCTCCGCCGGCGCCACCGGGAGCAACAAGTCTGAGCGTATACCTGGCCGGAGGACAGGGGCAGGTGGTGGGTGGGAGTGTGGTGGGAGAGTTGACCGCGGCGGGACCGGTGATCGTGATCGCAGCGTCGTTCACCAACGTGGCTTATGAACGGTTACCGTTAGAAGAAGAAGAGGAACAGGTTCAGATATCCGGTGGTGCCGGTGTGGGAAATAATAGTAATAATATTATTAACAATAACCCTTTTCCCGATCCTTCTTCGGGACTCCCTTTCTTCAGTTTGCCCATGAATGTTCAGTTCCCGGTGGATGGTTGGGCGGGAAACTCAGGTTCACGTTCACCATTTTGA 810 0.5914 MSMAGLDLGTASRFVQSLQRPDFNQQHHQHEPREDDKQSDPFSTEDGAQQASPGDVVGRRPRGRPAGSKNKPKPPVIITRESANTLRAHILEVGSGCDVFDSVASYARRRQRGICILSGSGTVTNVTLRQPAASGAVVTLHGRFEILSLTGSFLPPPAPPGATSLSVYLAGGQGQVVGGSVVGELTAAGPVIVIAASFTNVAYERLPLEEEEEQVQISGGAGVGNNSNNIINNNPFPDPSSGLPFFSLPMNVQFPVDGWAGNSGSRSPF 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium803g00037 269 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 29 218 IPR014476 GO:0003680
Vium803g00037 269 MobiDBLite consensus disorder prediction 24 42 - -
Vium803g00037 269 FunFam AT-hook motif nuclear-localized protein 86 214 - -
Vium803g00037 269 CDD DUF296 87 170 IPR005175 -
Vium803g00037 269 Gene3D - 86 218 - -
Vium803g00037 269 PIRSF ESCAROLA 7 253 IPR014476 GO:0003680
Vium803g00037 269 MobiDBLite consensus disorder prediction 1 77 - -
Vium803g00037 269 Pfam Plants and Prokaryotes Conserved (PCC) domain 87 200 IPR005175 -
Vium803g00037 269 ProSiteProfiles PPC domain profile profile. 83 219 IPR005175 -
Vium803g00037 269 SUPERFAMILY AF0104/ALDC/Ptd012-like 83 215 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium803g00037 Vium-Chr803 248449 249950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium803g00037 3 269 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 64.000 5.27e-95 280
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium803g00037 - - gmx:100818680 376.326