Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium803g00035 ATGGATTCTCGGGAACCGCACCAGCAACCGCAATTGCCAAACATGATGATGGGACCCACCTCCTACCCTTCCATGTTGGCCCCCGCCACCGCCCGATTTCCTTTCATCAGCAACAACCACCATCACCACCACAACCCTCCTCCTCCTCCACCTCCTCCCGAACCTCTCAACGACAACCATTCCTGCGAGGCTGCGCTGAAGCCGTGCGCGCTCGGAGTGGGCTCCTCGGAGTCCTCGAAGAAGAAAAGGGGCCGGCCCAGAAAATATTCTCCAGATGGCAACATTGCCTTGGGCCTGGTCCCAAATTATCCCGCCGCTTCTTCTGCGGAATCTCCCGCCAAGAAGCACCGCGGACGTCCTCCTGGTTCCGGAAAAAAACAGATGGACGCTCTCGGAATCTCTGGAACTGGCTTTACTCCGCATGTAATATCAGCGGAAGCTGGCGAGGACATTGGTGCAAAAATTATGGCCTTTTGTGAGCAAGGGCCACGGGCAGTTTGTATTCTCTCTGCCGTCGGTCCTATTCGTAATGTCACTATTCGACAGCCGCCTTCCGTCTCATCCCTATCTGGTCCTGATGTATCGTATGAGGGTGAATTTGAGATCATATCACTTACAGGTTTTACTCAACAATCTGAAAATAGTAATGGTCATATCGGAATGCGTTCCTTGAGTATAAGTTTAGCAGGTCCTGATGGACGAGTATTGGGTGGCGAAGTTACTGGAGCTCTTACTGCAGCATCAGCAGTGCAGGTCGTTGTGGGTAGCTTTATTGCAGATGGAAAAAAGTCTAGCTCAAATAACTTGAAATCTGGACGTTCTACGACGCCATCATCCCAATTGTTAACTTTTGGTGCTCCTACGACTCCGACCACTCCTACTTCTCAGGGGCCTTCAACCGAGTCATCTGAGGATAATGAAAATAGTAATTTTATTAAGGGCCCGGGAGGCCCGGGACTCTCTAACAATGCTAGTCAGCCTATGCATAACCTGCAGATGTACCATCATCAACTGTGGGCTGGCCATACTCAGCAGTGA 1038 0.5116 MDSREPHQQPQLPNMMMGPTSYPSMLAPATARFPFISNNHHHHHNPPPPPPPPEPLNDNHSCEAALKPCALGVGSSESSKKKRGRPRKYSPDGNIALGLVPNYPAASSAESPAKKHRGRPPGSGKKQMDALGISGTGFTPHVISAEAGEDIGAKIMAFCEQGPRAVCILSAVGPIRNVTIRQPPSVSSLSGPDVSYEGEFEIISLTGFTQQSENSNGHIGMRSLSISLAGPDGRVLGGEVTGALTAASAVQVVVGSFIADGKKSSSNNLKSGRSTTPSSQLLTFGAPTTPTTPTSQGPSTESSEDNENSNFIKGPGGPGLSNNASQPMHNLQMYHHQLWAGHTQQ 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium803g00035 345 MobiDBLite consensus disorder prediction 1 132 - -
Vium803g00035 345 SUPERFAMILY AF0104/ALDC/Ptd012-like 137 258 - -
Vium803g00035 345 MobiDBLite consensus disorder prediction 43 57 - -
Vium803g00035 345 SMART AT_hook_2 80 92 IPR017956 GO:0003677
Vium803g00035 345 SMART AT_hook_2 114 126 IPR017956 GO:0003677
Vium803g00035 345 MobiDBLite consensus disorder prediction 263 327 - -
Vium803g00035 345 MobiDBLite consensus disorder prediction 1 18 - -
Vium803g00035 345 ProSiteProfiles PPC domain profile profile. 135 279 IPR005175 -
Vium803g00035 345 Pfam Plants and Prokaryotes Conserved (PCC) domain 140 257 IPR005175 -
Vium803g00035 345 CDD DUF296 139 257 IPR005175 -
Vium803g00035 345 Gene3D - 140 271 - -
Vium803g00035 345 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 41 307 IPR039605 GO:0003680
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium803g00035 Vium-Chr803 230530 234257 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium803g00035 77 345 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 42.038 1.14e-60 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium803g00035 - - pvu:PHAVU_002G006700g 563.148