Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium803g00032 ATGCCGGTTCCACTTGCCCCCTACCCTCCGCCACCTCCGTATGCGCCTCCACCAAATGGTCCGCAGAGTCATCTTGTCTGTTCTGGGTGTAGAAACCTTCTGCTTTACCCAGTTGGAGCCACCTCTGTGTGCTGTGCTGTTTGCAATGCAGTCACCACTGTGCCACCTCCTGAAATGGCCCAGTTAGTATGTGGAGGCTGTCACACTTTACTCATGTACATCCGTGGAGCCACAAGTGTGCAATGTTCTTGTTGTCACACAGTCAATCTGGCTTTGGAAGCAAATCAAGTGGCACATGTCAACTGTGGGAACTGTAAGATGCTACTGAGGTACCAATATGGAGCAAGATCCGTGAAATGTGCCGTTTGCAGTTTTGTAACATTAGTTGGGATGCAGGCCTCAACAAGTACCACTGAGCAGAAATTCAGCACCTAA 435 0.4989 MPVPLAPYPPPPPYAPPPNGPQSHLVCSGCRNLLLYPVGATSVCCAVCNAVTTVPPPEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCKMLLRYQYGARSVKCAVCSFVTLVGMQASTSTTEQKFST 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium803g00032 144 PANTHER PROTEIN LSD1 15 54 IPR040319 -
Vium803g00032 144 Pfam LSD1 zinc finger 27 51 IPR005735 -
Vium803g00032 144 Pfam LSD1 zinc finger 64 88 IPR005735 -
Vium803g00032 144 Pfam LSD1 zinc finger 102 126 IPR005735 -
Vium803g00032 144 NCBIfam zinc finger domain, LSD1 subclass 99 129 IPR005735 -
Vium803g00032 144 NCBIfam zinc finger domain, LSD1 subclass 24 54 IPR005735 -
Vium803g00032 144 NCBIfam zinc finger domain, LSD1 subclass 61 90 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium803g00032 Vium-Chr803 213749 215522 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Vium803g00032 zf-LSD1 8.7e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium803g00032 - - vra:106777714 259.996