Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium803g00031 ATGCCGGTTCCACTTGCCCCCTACCCTCCGCCACCTCCGTATGCGCCTCCACCAAATGGTCCGCAGAGTCATCTTGTCTGTTCTGGGTGTAGAAACCTTCTGCTTTACCCAGTTGGAGCCACCTCTGTGTGCTGTGCTGTTTGCAATGCAGTCACCACTGTGCCACCTCCTGAAATGGCCCAGTTAGTATGTGGAGGCTGTCACACTTTACTCATGTACATCCGTGGAGCCACAAGTGTGCAATGTTCTTGTTGTCACACAGTCAATCTGGCTTTGGAAGCAAATCAAGTGGCACATGTCAACTGTGGGAACTGTAAGATGCTACTGAGGTACCAATATGGAGCAAGATCCGTGAAATGTGCCGTTTGCAGTTTTGTAACATTAGTTGGGGCCTCAACAAGTACCACTGAGCAGAAATTCAGCACCTAA 429 0.4988 MPVPLAPYPPPPPYAPPPNGPQSHLVCSGCRNLLLYPVGATSVCCAVCNAVTTVPPPEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCKMLLRYQYGARSVKCAVCSFVTLVGASTSTTEQKFST 142
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium803g00031 142 PANTHER PROTEIN LSD1 15 54 IPR040319 -
Vium803g00031 142 Pfam LSD1 zinc finger 102 126 IPR005735 -
Vium803g00031 142 Pfam LSD1 zinc finger 64 88 IPR005735 -
Vium803g00031 142 Pfam LSD1 zinc finger 27 51 IPR005735 -
Vium803g00031 142 NCBIfam zinc finger domain, LSD1 subclass 24 54 IPR005735 -
Vium803g00031 142 NCBIfam zinc finger domain, LSD1 subclass 99 129 IPR005735 -
Vium803g00031 142 NCBIfam zinc finger domain, LSD1 subclass 61 90 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium803g00031 Vium-Chr803 213422 215522 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Vium803g00031 zf-LSD1 8.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium803g00031 - - vun:114174628 259.996