Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium803g00026 ATGGGAAGCAATGGACTCTGCAATCTCTTTTCATGCTTCAAGGCATCTTCCAATCATGGCCATGGTGGCCATGGTGGCCATGGCCATAACCATAACCATAACCAGAGCCAGTTGGTTTTTGCGGAGACAGAGCCATTGGACGAAACCCTAGGCCACTCTTTCTGCTACGTCAGATCCTCCGCGCGCTTTCTCTCTCCCTCTCATTCCGATCGCATCCTCTCTCCCTCCAACTCTCTCCGCTTCTCCCCTTCTCATCGCTCCGATTTCCCCGAAACCGCATTCAAGGCCATTTCCGGAGCCTCGGTCAGCGCCAACAGTTCCGTGCCCAAAACCGTGCTCCAGTCCGAGGATGACGACACCACCGTCAATGGCTTCAGAGGAACGGCTTCCTTCAGCGCTCTCCCTCTGCAGCCCGCTCCCAGAGGAGGAGAAACTGCTCCCTCTGAGAGAGAGCGGAAGGCGTTCTTTCTCTCAGGGCCAATTGAGAGCGGCGCGCTCTCGGGACCCCTCGACGACTCCGTTTCGAGCTCTGCGGGAGTGCCCTTCTCTGCTCCGCTCGGTGGTGGAGTGTATGTGAAGAAGAAGCGGAAGAAGAGCATTGCCGGGTTGAGAAAGGCCTTCCAGCGGAGTCTCTCGGAGAAGAAGCGGCCTTGGGTGGTGCCTGTGGGGCGGAAGGGGAAGACGGAAGCGACGAGTGAGACGGAGAACGAGAGCAATGTGCAGTGGGCGCTGGGAAAAGCGGGGGAGGATCGTGTGCATGTCGTTGTATCGGAAGAACAGGGTTGGTTGTTCGTAGGGATATACGACGGTTTCAATGGCCCTGATGCGCCAGAGTTTCTCATGGGTAATCTTTACCGTGCCCTTCACAAAGAGCTCCAGGGTTTGTTTTGGGAACTTGAAGAACCGCAGTCGCAGGTGCAGGGAACTAACCCTGCACCTGAGCTGGAGGATAATGAAGCTGAACCCCGGAATGAGGTGGAGGTGGAGGAAGACTCTAGTTCTCTCCGAGGATCGGTTAAGAGAGTGACGTTTCAAGCGGAGGGGACTGAAAGTAGGAGGAGAAGGCTGTGGGAGTTTTTGGCTGAGGAGGATGATGCGGAGAACGGGCTCGATCTTTCCGGGTCTGATAGGTTTGCGTTTTCGGTTGATGATGCGCTCAGTGCTAGCAAGGAGGGTTCGGGAGGTAGTAGACGGTGGTTGATTTTGTCTAAGTTGAAGCATGGGTTGTCGAGGCATAAAGAGGGTCACGGGAGGAGTTTGTTGCCGTGGAGCTTGGGCGTGGGGGAGGAGAAAGAGAAGGTTGAGGTGGAAAATCCAACGACGGCAGAGGAGGAGGAGGAGGAGAAGGGTCACGGTGGGAGGAAGCGAAAAGTGGGGCCTGTGGATCATGAGTTGGTTTTGGGAGCGTTGTCTAGGGCGCTTGAGATGACTGAGCTTGCTTATTTGGATATGACGGATAAGCTGATTGATACCAATCCGGAGCTTGCTCTGATGGGGTCGTGTCTGTTGGCTGTGTTGATGAGGGATGAGGATGTTTATGTTATGAACGTGGGGGATAGCCGCGCCATTGTGGCACATTATGAGTGTGAGGAGGTTCACGCTACTAGTAAGGAAACGGGAAATGGTGGAGGCATTGGGTCAAGCGGGGAGTGCATAGTGGAGGAGTCTTCGGCTCCAGACGAAGGTGGTGTCGTGTTAGGAAATGAGGGTCCTGCTAGGGAACGGAGGTTGGTTGCATTGCAGCTGTCCACTGATCACAGCACCAGCATTGAAGAGGAAGTTGTTAGAATTAAGAATGAGCATCCTGATGATAGCCATTGTATTGTGAATGATAGAGTGAAAGGCCGTCTTAAGGTTACTAGAGCTTTTGGTGCTGGATTTTTGAAACAGCCAAAGTGGAATGATGTGGTGCTGGAAATGTTTCGTAACGAATATATTGGCACTGCTCCATATATATCCTGCTTCCCTTCATTGCGTCACCATAGATTATGCCCTAGAGATCAGTTCTTGATCCTCTCATCTGATGGTTTGTATCAATACCTAAGCAATCAAGAAGTGGTTTCTCAGGTCGAGAGCTTTATGGAAAAGTTTCCGGATGGAGATCCTGCCCAGCATTTAATAGAAGAGCTGCTCCTACGTGCTGCCAAGAAGGCTGGAATGGATTTCCATGAGTTGCTGGATATACCTCAAGGAGATCGGAGGAAGTATCATGATGATGTGACTGTAATGGTGATATCACTTGAAGGAAGAATCTGGAAATCATCAGGGAAGTATCCATGA 2280 0.5219 MGSNGLCNLFSCFKASSNHGHGGHGGHGHNHNHNQSQLVFAETEPLDETLGHSFCYVRSSARFLSPSHSDRILSPSNSLRFSPSHRSDFPETAFKAISGASVSANSSVPKTVLQSEDDDTTVNGFRGTASFSALPLQPAPRGGETAPSERERKAFFLSGPIESGALSGPLDDSVSSSAGVPFSAPLGGGVYVKKKRKKSIAGLRKAFQRSLSEKKRPWVVPVGRKGKTEATSETENESNVQWALGKAGEDRVHVVVSEEQGWLFVGIYDGFNGPDAPEFLMGNLYRALHKELQGLFWELEEPQSQVQGTNPAPELEDNEAEPRNEVEVEEDSSSLRGSVKRVTFQAEGTESRRRRLWEFLAEEDDAENGLDLSGSDRFAFSVDDALSASKEGSGGSRRWLILSKLKHGLSRHKEGHGRSLLPWSLGVGEEKEKVEVENPTTAEEEEEEKGHGGRKRKVGPVDHELVLGALSRALEMTELAYLDMTDKLIDTNPELALMGSCLLAVLMRDEDVYVMNVGDSRAIVAHYECEEVHATSKETGNGGGIGSSGECIVEESSAPDEGGVVLGNEGPARERRLVALQLSTDHSTSIEEEVVRIKNEHPDDSHCIVNDRVKGRLKVTRAFGAGFLKQPKWNDVVLEMFRNEYIGTAPYISCFPSLRHHRLCPRDQFLILSSDGLYQYLSNQEVVSQVESFMEKFPDGDPAQHLIEELLLRAAKKAGMDFHELLDIPQGDRRKYHDDVTVMVISLEGRIWKSSGKYP 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium803g00026 759 CDD PP2Cc 450 747 IPR001932 -
Vium803g00026 759 MobiDBLite consensus disorder prediction 105 130 - -
Vium803g00026 759 Pfam Protein phosphatase 2C 565 715 IPR001932 -
Vium803g00026 759 SMART PP2C_4 233 745 IPR001932 -
Vium803g00026 759 SUPERFAMILY PP2C-like 246 748 IPR036457 -
Vium803g00026 759 Gene3D - 205 753 IPR036457 -
Vium803g00026 759 ProSiteProfiles PPM-type phosphatase domain profile. 230 747 IPR001932 -
Vium803g00026 759 MobiDBLite consensus disorder prediction 431 458 - -
Vium803g00026 759 PANTHER PROTEIN PHOSPHATASE 2C 225 746 IPR015655 GO:0004722|GO:0006470
Vium803g00026 759 MobiDBLite consensus disorder prediction 302 334 - -
Vium803g00026 759 MobiDBLite consensus disorder prediction 105 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium803g00026 Vium-Chr803 185172 190553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium803g00026 1 758 PP2C-type Phosphatase Gene Family AT2G35350 56.934 0.0 793
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium803g00026 - - gmx:100775371 1281.93