Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium803g00007 ATGGTTTGCACTGCCAATGATTTACAAGGATGGAAAGATTTTCCAAAGGGACTCAGGGTTCTTGTACTTGACGGAGATAGAAGTTCTGCTGCTGAAATAGGAGAACAACTTGAGGCCATGGACTATCATGTTTCTACCTTCTATGACGAGAACGAAGCTTTGTCAGCAGTCTCAAGTAGCCCTGAAGACTTCCATGTTGCCATAGTGGAGGTGAGTACAAGCAGCAGCCTTGGAGGTTTCAAATTTCTTGAGAATGCAAAGGACTTGCCTACCATTATGATTTCAAAGAACCAGTGCCTGAACACCACGATGAAGTGCATTGCGCTTGGTGCCGTTGAGTTTCTCAGTAAACCACTCTCTGAGGACAAGCTCAAAAATATTTGGCAGCATGTTGTTCACAAGGCCTTTAATTCTAGGGCAAATGGTCTGTCTGAGTCACTAAAACCTGTCAAAGAATCTGTAGAATCAGTGCTGCAGCTTCAAACAGGCAATGAACAAGATAAAACTCATAAAAGAACCATGTCGATTGATTTAGAGAATGTGTCCAGATTTGGTGATAATGTCAATGAGCAATCTGTATGTGATAAATATCCGGCTCCTTCAACCCCACAATTGAAACATGGGACACGGTTATTGGATGATGGAGATTGCCATGAGCAGACTAATTTCTCAACAGAAAAAGAAAGTGGAGAACATGATGGGGAATGCAAATCAGTCGAAACTTCATGTGAGAATTTGAATGCTGAAAGTACTCCTCAACCAACTGAACCTGAGGAGACTCTGATTAAGGAGGAAGAGGATTTTGCCAATGGTTCCAAGGGCGAGAGAGCTGTTTCACTGAATCTACAGAATGAAAAGTTTCTCAGCAATGCAGATGGTCATACATCTCCAAAAAAGATGGGAGTTTTTAATGATTCATGTGAGATTAAAGCTAACAGGAAGAAGATGAAATGTGCAGTTTCTACCTTCTATGACGAGAACGAAGCTTTGTCAGCAGTCTCAAGTAGCCCTGAAGACTTCCATGTTGCCATAGTGGAGGTGAGTACAAGCAGCAGCCTTGGAGGTTTCAAATTTCTTGAGAATGCAAAGGACTTGCCTACCATTATGATTTCAAAGAACCAGTGCCTGAACACCACGATGAAGTGCATTGCGCTTGGTGCCGTTGAGTTTCTCAGTAAACCACTCTCTGAGGACAAGCTCAAAAATATTTGGCAGCATGTTGTTCACAAGGCCTTTAATTCTAGGGCAAATGGTCTGTCTGAGTCACTAAAACCTGTCAAAGAATCTGTAGAATCAGTGCTGCAGCTTCAAACAGGCAATGAACAAGATAAAACTCATAAAAGAACCATGTCGATTGATTTAGAGAATGTGTCCAGATTTGGTGATAATGTCAATGAGCAATCTGTATGTGATAAATATCCGGCTCCTTCAACCCCACAATTGAAACATGGGACACGGTTATTGGATGATGGAGATTGCCATGAGCAGACTAATTTCTCAACAGAAAAAGAAAGTGGAGAACATGATGGGGAATGCAAATCAGTCGAAACTTCATGTGAGAATTTGAATGCTGAAAGTACTCCTCAACCAACTGAACCTGAGGAGACTCTGATTAAGGAGGAAGAGGATTTTGCCAATGGTTCCAAGGGCGAGAGAGCTGTTTCACTGAATCTACAGAATGAAAAGTTTCTCAGCAATGCAGATGGTCATACATCTCCAAAAAAGATGGGAGTTTTTAATGATTCATGTGAGATTAAAGCTAACAGGAAGAAGATGAAAGTAGACTGGACGCCCGAGCTGCATAAAAATTTTGTGAAGGCAGTTGAACAACTAGGTATTGATCAAGCCATTCCTTCTAGAATATTGGAGATAATGAAAGTGGAAGGATTGACAAGGCACAATGTGGCAAGCCATCTTCAGAAATATAGAATGCACAGGAGACAGAGTGCACCTGGGGAAGAAGATCGAAAATGGCACAATCAAAGAGATGCAATGCAAAGGAATTTTTATCTGCAAAGACCAATCATGGCCTACCCTCCCTATCACTCTAATCAAACCATTTCTCCAGCACCTATATATCCTATGTGGGGACAACCAGGAAGTCAAACAGCTGCTGTACAGATTTGGGGGCCTCCTGCGTACCCCTTGTGGCATCCTACAGAAAGTTGGAACTGGAAGCCTTATCCGGGGATGCATGTGGATGCTTGGGGATGCCCATTGTTCCCACCTCCTCAAGCTCCTGGTTTTCACTTCAATCAAAATATACCTGGATTGCACACTCCTAAACCAGTGGATTACAGATTCAGCATGCCGCGTAGTTCCTTTGAGCATCATCCGGCAGAGGAGGTGGTAGACAAGGTTGTGAAAGAAGCAATTAACAAGCCATGGCTACCATTGCCCTTAGGACTCAAAGCTCCTTCCACGGATAGTGTGTTAGCTGAGCTCTCCAAACAAGGCATATCTAGCATCCCTCTTGGCAACAAGGGTTCTTCTGCTCCAAAACCCTGCATTCAGGTAGACTGGACGCCCGAGCTGCATAAAAATTTTGTGAAGGCAGTTGAACAACTAGGTATTGATCAAGCCATTCCTTCTAGAATATTGGAGATAATGAAAGTGGAAGGATTGACAAGGCACAATGTGGCAAGCCATCTTCAGAAATATAGAATGCACAGGAGACAGAGTGCACCTGGGGAAGAAGATCGAAAATGGCACAATCAAAGAGATGCAATGCAAAGGAATTTTTATCTGCAAAGACCAATCATGGCCTACCCTCCCTATCACTCTAATCAAACCATTTCTCCAGCACCTATATATCCTATGTGGGGACAACCAGGAAGTCAAACAGCTGCTGTACAGATTTGGGGGCCTCCTGCGTACCCCTTGTGGCATCCTACAGAAAGTTGGAACTGGAAGCCTTATCCGGGGATGCATGTGGATGCTTGGGGATGCCCATTGTTCCCACCTCCTCAAGCTCCTGGTTTTCACTTCAATCAAAATATACCTGGATTGCACACTCCTAAACCAGTGGATTACAGATTCAGCATGCCGCGTAGTTCCTTTGAGCATCATCCGGCAGAGGAGGTGGTAGACAAGGTTGTGAAAGAAGCAATTAACAAGCCATGGCTACCATTGCCCTTAGGACTCAAAGCTCCTTCCACGGATAGTGTGTTAGCTGAGCTCTCCAAACAAGGCATATCTAGCATCCCTCTTGGCAACAAGGGTTCTTCTGCTCCAAAACCCTGCTGA 3246 0.4378 MVCTANDLQGWKDFPKGLRVLVLDGDRSSAAEIGEQLEAMDYHVSTFYDENEALSAVSSSPEDFHVAIVEVSTSSSLGGFKFLENAKDLPTIMISKNQCLNTTMKCIALGAVEFLSKPLSEDKLKNIWQHVVHKAFNSRANGLSESLKPVKESVESVLQLQTGNEQDKTHKRTMSIDLENVSRFGDNVNEQSVCDKYPAPSTPQLKHGTRLLDDGDCHEQTNFSTEKESGEHDGECKSVETSCENLNAESTPQPTEPEETLIKEEEDFANGSKGERAVSLNLQNEKFLSNADGHTSPKKMGVFNDSCEIKANRKKMKCAVSTFYDENEALSAVSSSPEDFHVAIVEVSTSSSLGGFKFLENAKDLPTIMISKNQCLNTTMKCIALGAVEFLSKPLSEDKLKNIWQHVVHKAFNSRANGLSESLKPVKESVESVLQLQTGNEQDKTHKRTMSIDLENVSRFGDNVNEQSVCDKYPAPSTPQLKHGTRLLDDGDCHEQTNFSTEKESGEHDGECKSVETSCENLNAESTPQPTEPEETLIKEEEDFANGSKGERAVSLNLQNEKFLSNADGHTSPKKMGVFNDSCEIKANRKKMKVDWTPELHKNFVKAVEQLGIDQAIPSRILEIMKVEGLTRHNVASHLQKYRMHRRQSAPGEEDRKWHNQRDAMQRNFYLQRPIMAYPPYHSNQTISPAPIYPMWGQPGSQTAAVQIWGPPAYPLWHPTESWNWKPYPGMHVDAWGCPLFPPPQAPGFHFNQNIPGLHTPKPVDYRFSMPRSSFEHHPAEEVVDKVVKEAINKPWLPLPLGLKAPSTDSVLAELSKQGISSIPLGNKGSSAPKPCIQVDWTPELHKNFVKAVEQLGIDQAIPSRILEIMKVEGLTRHNVASHLQKYRMHRRQSAPGEEDRKWHNQRDAMQRNFYLQRPIMAYPPYHSNQTISPAPIYPMWGQPGSQTAAVQIWGPPAYPLWHPTESWNWKPYPGMHVDAWGCPLFPPPQAPGFHFNQNIPGLHTPKPVDYRFSMPRSSFEHHPAEEVVDKVVKEAINKPWLPLPLGLKAPSTDSVLAELSKQGISSIPLGNKGSSAPKPC 1081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium803g00007 1081 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 588 647 IPR017930 -
Vium803g00007 1081 SUPERFAMILY Homeodomain-like 839 892 IPR009057 -
Vium803g00007 1081 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 841 892 IPR017930 -
Vium803g00007 1081 SMART REC_2 18 128 IPR001789 GO:0000160
Vium803g00007 1081 Pfam Myb-like DNA-binding domain 840 888 IPR001005 -
Vium803g00007 1081 Pfam Myb-like DNA-binding domain 594 643 IPR001005 -
Vium803g00007 1081 MobiDBLite consensus disorder prediction 468 489 - -
Vium803g00007 1081 FunFam Two-component response regulator 587 649 - -
Vium803g00007 1081 FunFam Two-component response regulator-like APRR2 17 142 - -
Vium803g00007 1081 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Vium803g00007 1081 SUPERFAMILY Homeodomain-like 590 647 IPR009057 -
Vium803g00007 1081 Gene3D - 18 145 - -
Vium803g00007 1081 Gene3D - 308 421 - -
Vium803g00007 1081 MobiDBLite consensus disorder prediction 209 236 - -
Vium803g00007 1081 MobiDBLite consensus disorder prediction 191 236 - -
Vium803g00007 1081 SUPERFAMILY CheY-like 316 413 IPR011006 -
Vium803g00007 1081 Pfam Response regulator receiver domain 20 126 IPR001789 GO:0000160
Vium803g00007 1081 PANTHER TRANSCRIPTION ACTIVATOR GLK1 305 824 IPR044825 GO:0003700|GO:0045893
Vium803g00007 1081 FunFam Two-component response regulator 832 894 - -
Vium803g00007 1081 Gene3D - 587 648 - -
Vium803g00007 1081 Gene3D - 834 893 - -
Vium803g00007 1081 NCBIfam myb-like DNA-binding domain, SHAQKYF class 591 645 IPR006447 GO:0003677
Vium803g00007 1081 NCBIfam myb-like DNA-binding domain, SHAQKYF class 839 890 IPR006447 GO:0003677
Vium803g00007 1081 SUPERFAMILY CheY-like 16 137 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium803g00007 Vium-Chr803 50235 62530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium803g00007 301 824 Response Regulator Gene Family AT4G18020 46.209 1.93e-115 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vium803g00007 Response_reg 4.8e-09 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium803g00007 - - vum:124823451 2198.7