Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8028g00001 ATGTCCGGCGACACCTCCTTCGCGGACCACAAGCTCTGCGGTTTCCTCTGTGCGGTTCTCACAGCCACTGACCGCGACTCCGATCCAGCCTTCGCTGAGCGCTGCGAAATCTTTAGCGACGGGGGTGAGGTCGGGTTCCGCTCCCAAACCGGCGTCGTTTTGTCTACGGTGGTGAATTCATCTCAATGCGGCGGCGGCGGCGGAGGATCGAAAGCCAAGAGGACGCACAGCGTTGGGATGGTGAATGGGAGCATGAGCGTGGTTCACCAGCTCCATGCTATGGTCACTCGCAAGTGCGCGAAAGTTGACGCACGCGTGGTGTGCGTCGAGTCGCCTAGGGTTGTGCTGCTGGTTGAAGTGTATCTTCCTATTCAAGTGTGGAGTGGCTGGCAGTTCCCGCGGTCGGGGGCAGTTGCCGCCGCCATTTTTCGCCATTTGAGCTGTGATTGGGATGAGCGAAGTTCAATGCTTTCATATCCAGACTATTGTAGGAAGACTTATGGAGCAAATGAGAGTAATTGGAACCTTTCTGATTGACATGTACTTTGTTGCAAGCTCCATCCCCATGTTAGCAGTTCTTCAAGGAAAAGCCTATTTGAACTTCATGAACTTTTCAAGACACTACCTGGCATAGGAAAACAACGGATGTTTAATAGCTCCAAAATAATTCCTATGGATCACTCATGCAGATGGGGCATTTGGGAGTTATCTGATGATATTTTAACAAAAATTTTATCTTCCCTGGACCCAATGGACCTCACTAGGGTTTCTGAAACGTGTCATCATCTAAGATCATTGGCTGCTTCTGTAATGCCTTGTACAAAGTTAAATCTGTTTCCTCATCAGCTGACAGCTGTTGAGTGGATGTTGCATCGTGAGCGAAATGCTGAGCTTTCGCCACACCCTTTATATGCATTTCTCTCAACTGAAGATGGTTTTAATTTCCATGTAAATACCGTTTCTGGTGAAATTGTCACTGGGGAAGCTCCCACCATCAGGGATTTTCGAGGAGGAATGTTTTGTGATGAACCTGGTTTGGGTAAGACTGTAACTGCACTCTCTCTTATTATGAAGACACGAGGTACATTGGCAGATCCACCAGATGAGGCACAAGTTGTCTGGTGTCAACATAATGGTAATCAGAAATGTGGTTATTATGAGATCAGTGGTAATAACATAACTGGTTGTTCTGCATTGGGTAAAAGGAACGTGAGCCAATATATCAGTAGAACTAATGATAACCATGAATACTCCTCCAAAAAAGCCAGAATGTCAAATCCTGACCAACACATGATTAAACTTCAGAGTTCATGTTCCATGGAAGTAAACAAATCACCTGTGGAGGCACGGTTTAAGGAATCTATGCATTCAAATCAGTATACTAGGAGTTTGAGCCGCATAAAGAAAAATCTATGCTTCACAAACGAAGAGGAAGCTATAATATCCAAGGAAAGAGAAACTGAAGGATTAATTAAAGCAAATCATGCCTCAGATGTTACACCTCATTTATCTCAAAAGAAGCTGCCTGGGAAGCCTGAAGGTGATCCTTTTGAGTACAGTGATACATGGATTCAGTGTGATGCTTGTCACAAGTGGCGAAAGCTGGCAGACAATAGTATGGCTAGTTCTAGTGCAGCATGGTTTTGTAGTATGAACCCTGACCCTCTTTATCAAAGTTGTAGTGTCCCTGAACAACATTTTCGTTCTACATCTAGGATAACATACTTGCCAGGGTTTCACTTAAAAGGAACTCATGGTGGTGACAGACAAAATGTTTCTTTTTTCACCAGCGTGCTTAAGGAGCACTACTCACTGATAAATTCTCAGACGAAAAAAGCCCTGTCCTGGTTGGCTAAAATTTCAACAGACAAGCTAGCAGCTATGGAAACAAATGGAATAAGAGGTCCTATTTTAAACACGTGTACTGCATCTGGCAGACATTTTAATGCCTTCCACAAAGTATTTCAAGCATTTGGCCTCTTAAAGAGAGTAGACAAAGGTGTGTGCAAGTGGTTCTATCCTCAACATCTTAACAATTTGACTTTTGATGTGGCTGCCCTTGGCATGGCACTCCGTGAGCCTATAGATTTTGTTAGGTTATACTTGTCAAGGGCTACCCTGGTAGTTGTTCCAGCAAACTTGGTTGATCATTGGAAAACACAAATAGAAAAGCATGTGAGGCCTGGTCAATTGCGGATTTATGTTTGGACTGATCACAGGAAGCCATCTGTGCATTGTCTTGCATGGGATTACGACATTGTCATAACCACTTTTAGTCGTCTAAGTGCTGAGTGGGGCCCTCGTAAGAGGAGTGTTTTGATGCAAGTACATTGGTTTCGGGTAATTTTAGATGAGGGGCACACTCTTGGGTCTAGCCTGAACTTAACAAACAAGTTGCAAATGGCCATTTCATTGATAGCTTCTAATCGATGGATACTAACAGGAACTCCTACACCTAACACTCCTAACAGCCAACTTCCACATCTGCAAACATTGCTAAGGTTCCTTCATGAAGAATCTTATGGACTGAATCAAAAGTCATGGGAAGCTGGTGTGCTCAGGCCATTTGAAGCAGAAATGGAGGAAGGAAGGTCTCGTCTGTTAGATCTGCTTCACAAATGCATGATTAGTGCTAGAAAGACAGATTTACAAAGCATCCCACCATGCATCAAGAAAGTTGTTTATCTGGATTTTAATGAGGAGCATGCTAGAAGTTACAATGAATTGGTAATCACTGTAAGGCGTAATATATTGATGGCTGATTGGAATGATCCCTCACATGTTGAGAGTCTACTGAATCCAAAGCAGTGGAAGTTTCGTAGGGCAACTATAAAAAATGTCAGGCTTTCGTGTTGTGTTGCTGGACATATTAAGGTTACACATGCTGGTGAAGATATTCAAGAAACAATGGATATGTTAGTACAAAGTGGTCTGGATCCTACTTCTGGAGAGTATACCTCCATAAGATGTAATCTCTTGTATGGTGGTCACTGTGTCAGGTGCAAGGAATGGTGCCGCCTTCCGGTCATTACACCATGTCGGCATTTGTTGTGTCTTGATTGTGTTTCTATTGACCATACGAAGTGTACTTGTCCTGGCTGCAGTAAATTGTATGAGATGCAAAGTAGACTTCCCCGACCTGAAAATCCTAATCCAAAGTGGCCTGTACCCAAAGATCTTATTGAGCTACAACCGTCGTATAAGCAGGATAATTGGGATCCAGATTGGCAATCTACATCTAGTACTAAAGTCTCCTATCTTGTCCAGAAGTTGAAAGCCTTGCAAGGAACCAACGAAGAGACCAGCTTCTGTGCAGACAATAACAATGATGAGATGCCTAATGAGAATAGTTTCTCTGTGCATAGAAGTGATGATAAATTAGCATTTCAAAAATGTTTGAAGAGCGGCACAAAAACCAATTCTAACCTTGAGAAAGTTCTTATATTTTCTCAATTTCTTGAGCATATACATGTCATCGAACAGCAGTTAGCTATTGCTGGTATCAAATATGCTGGAATGTATAGCCCAATGCATTCCAGCAACAAGAAGAAGTCTTTAGCCACGTTCCAGCATGATTCAAGTTGTATGGCGCTTCTAATGGATGGAAGTGCTGCATTGGGTCTGGACTTGAGTTTTGTTACGCATGTATTTCTAATGGAGCCAATTTGGGACAGAAGTATGGAGGAGCAAGTAATTAGTCGTGCGCATCGAATGGGTGCTTCTCGTCCTATTCATGTTGAAACACTAGCAATGCATGGTACAATTGAAGAACAAATGCTAGGCTTTTTACAGGAAGCTGATAAATGTAGAAGATCGCCAATTAAGGATGTTGCCGACTCTGAGGATGATGGCGGGGGACGAGGATATAAATCATTGCATGATTTTGCGGAAAGCAGTTATCTATTGAAACTAAGATCTGTGTATACTAATTCAGAATGTCCAGAAGGTGTTTTGATTGATCAACATCAAGCAAGTTCTAACTAA 3984 0.429 MSGDTSFADHKLCGFLCAVLTATDRDSDPAFAERCEIFSDGGEVGFRSQTGVVLSTVVNSSQCGGGGGGSKAKRTHSVGMVNGSMSVVHQLHAMVTRKCAKVDARVVCVESPRVVLLVEVYLPIQVWSGWQFPRSGAVAAAIFRHLSCDWDERSSMLSYPDYCRKTYGANESNWNLSDXHVLCCKLHPHVSSSSRKSLFELHELFKTLPGIGKQRMFNSSKIIPMDHSCRWGIWELSDDILTKILSSLDPMDLTRVSETCHHLRSLAASVMPCTKLNLFPHQLTAVEWMLHRERNAELSPHPLYAFLSTEDGFNFHVNTVSGEIVTGEAPTIRDFRGGMFCDEPGLGKTVTALSLIMKTRGTLADPPDEAQVVWCQHNGNQKCGYYEISGNNITGCSALGKRNVSQYISRTNDNHEYSSKKARMSNPDQHMIKLQSSCSMEVNKSPVEARFKESMHSNQYTRSLSRIKKNLCFTNEEEAIISKERETEGLIKANHASDVTPHLSQKKLPGKPEGDPFEYSDTWIQCDACHKWRKLADNSMASSSAAWFCSMNPDPLYQSCSVPEQHFRSTSRITYLPGFHLKGTHGGDRQNVSFFTSVLKEHYSLINSQTKKALSWLAKISTDKLAAMETNGIRGPILNTCTASGRHFNAFHKVFQAFGLLKRVDKGVCKWFYPQHLNNLTFDVAALGMALREPIDFVRLYLSRATLVVVPANLVDHWKTQIEKHVRPGQLRIYVWTDHRKPSVHCLAWDYDIVITTFSRLSAEWGPRKRSVLMQVHWFRVILDEGHTLGSSLNLTNKLQMAISLIASNRWILTGTPTPNTPNSQLPHLQTLLRFLHEESYGLNQKSWEAGVLRPFEAEMEEGRSRLLDLLHKCMISARKTDLQSIPPCIKKVVYLDFNEEHARSYNELVITVRRNILMADWNDPSHVESLLNPKQWKFRRATIKNVRLSCCVAGHIKVTHAGEDIQETMDMLVQSGLDPTSGEYTSIRCNLLYGGHCVRCKEWCRLPVITPCRHLLCLDCVSIDHTKCTCPGCSKLYEMQSRLPRPENPNPKWPVPKDLIELQPSYKQDNWDPDWQSTSSTKVSYLVQKLKALQGTNEETSFCADNNNDEMPNENSFSVHRSDDKLAFQKCLKSGTKTNSNLEKVLIFSQFLEHIHVIEQQLAIAGIKYAGMYSPMHSSNKKKSLATFQHDSSCMALLMDGSAALGLDLSFVTHVFLMEPIWDRSMEEQVISRAHRMGASRPIHVETLAMHGTIEEQMLGFLQEADKCRRSPIKDVADSEDDGGGRGYKSLHDFAESSYLLKLRSVYTNSECPEGVLIDQHQASSN 1327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8028g00001 1327 CDD RING-HC 997 1034 - -
Vium8028g00001 1327 CDD DEXDc_SHPRH-like 699 876 - -
Vium8028g00001 1327 Gene3D - 517 570 - -
Vium8028g00001 1327 SMART ultradead3 274 846 IPR014001 -
Vium8028g00001 1327 Gene3D - 684 880 IPR038718 -
Vium8028g00001 1327 Gene3D - 1064 1298 IPR027417 -
Vium8028g00001 1327 SMART fbox_2 236 276 IPR001810 GO:0005515
Vium8028g00001 1327 SUPERFAMILY RING/U-box 990 1040 - -
Vium8028g00001 1327 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 267 359 IPR027417 -
Vium8028g00001 1327 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 680 835 IPR014001 -
Vium8028g00001 1327 ProSiteProfiles F-box domain profile. 230 282 IPR001810 GO:0005515
Vium8028g00001 1327 ProSitePatterns Zinc finger RING-type signature. 1013 1022 IPR017907 -
Vium8028g00001 1327 ProSiteProfiles Zinc finger CW-type profile. 517 568 IPR011124 GO:0008270
Vium8028g00001 1327 Pfam SNF2-related domain 281 921 IPR000330 GO:0005524|GO:0140658
Vium8028g00001 1327 CDD F-box_SF 235 267 - -
Vium8028g00001 1327 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 777 1293 IPR027417 -
Vium8028g00001 1327 SUPERFAMILY F-box domain 227 269 IPR036047 GO:0005515
Vium8028g00001 1327 Pfam F-box domain 235 270 IPR001810 GO:0005515
Vium8028g00001 1327 SMART helicmild6 1157 1239 IPR001650 -
Vium8028g00001 1327 ProSiteProfiles Zinc finger RING-type profile. 998 1035 IPR001841 -
Vium8028g00001 1327 Pfam Helicase conserved C-terminal domain 1138 1239 IPR001650 -
Vium8028g00001 1327 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 93 1265 - -
Vium8028g00001 1327 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1135 1285 IPR001650 -
Vium8028g00001 1327 Pfam CW-type Zinc Finger 522 565 IPR011124 GO:0008270
Vium8028g00001 1327 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 703 875 IPR027417 -
Vium8028g00001 1327 CDD SF2_C_SNF 1144 1249 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8028g00001 705 1259 RAD5 or RAD16-like Gene Family AT5G22750 25.714 7.89e-45 175
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vium8028g00001 SNF2_N 8.2e-99 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8028g00001 - - gmx:100803102 2285.38