Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8020g00001 ATGACCATGTCTATCTTCATGCAGATACTGGCCCTTGGATTTCTTGAGCCAGTGATTGACCAAGGCTTCACTTGTTTGGGGATGCAATACACTTCTGCTACGTTTGCATCTGCTATTATGAACGCTGTACCTTCTGTAACCTTTCTTATAGCAGTAATTCTCAGATTAGAAAGTGTAAAGTTGAAGGAGGTACGCAGTCAAGCGAAGGTAATAGGAACCTTGGTAACCTTTGGTGGGGCTCTGTTGATGACACTTTACAAAGGGCCCAAAATCAATCTTATAAATAATCCAAACAGCTTCCAGAAAGATGAAAGGCAGTCCCTTGAAGATGACAAACACTGGTTCACAGGGACCCTATTTTTATGTCTTGGTTGTTTGGCTTGGTCTTCCTTTTACATATTGCAGTCCATAACAGTAAAAAGGTACCCTGCGGAACTATCGCTGTCGTCGTTGATATGCTTGGCCGGTGCATTGCAAAGTGCTGTGGTTGCTCTGATTGCAGATCACAACCCTCGTTCTTGGGCTATTGCTTTCGACTACACACTCTATGGCCCTCTTTATGCTAACTTATCTCATGATCAATAA 585 0.4291 MTMSIFMQILALGFLEPVIDQGFTCLGMQYTSATFASAIMNAVPSVTFLIAVILRLESVKLKEVRSQAKVIGTLVTFGGALLMTLYKGPKINLINNPNSFQKDERQSLEDDKHWFTGTLFLCLGCLAWSSFYILQSITVKRYPAELSLSSLICLAGALQSAVVALIADHNPRSWAIAFDYTLYGPLYANLSHDQ 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8020g00001 194 PANTHER WAT1-RELATED PROTEIN 1 188 IPR030184 GO:0016020|GO:0022857
Vium8020g00001 194 SUPERFAMILY Multidrug resistance efflux transporter EmrE 7 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8020g00001 Vium-Chr8020 15398 17078 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8020g00001 1 187 Nodulin-like Gene Family AT4G08290 60.317 8.01e-79 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8020g00001 - - vum:124846229 385.571