Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium8006g00001 ATGGGAAGAGCTCCTTGTTGTTCTAAAGTAGGGTTGCACAAAGGTCCATGGACTCCTAAAGAAGATGCATTGCTTACAAAGTATATACAAGCTCATGGAGAAGGCCAATGGAAATCACTACCCAAAAAAGCTGGGCTTCTTAGATGTGGGAAAAGTTGCAGATTGAGATGGATGAATTATCTGAGACCTGATATAAAGAGAGGAAACATAACCCCAGAAGAAGATGATCTTATAATCAGAATGCATTCACTTTTGGGGAACAGATGGTCCCTCATAGCAGGAAGATTACCAGGCAGAACCGACAATGAAATAAAGAACTATTGGAACACCCATCTCTGCAAAAAGCTGAAAAATCAAACAGGAGAAGATACTGAGACACCCAATTCCTTGGAGAGTCCTCAGCAAGAACCTGCAAGTGGCAGCAAAAAGAAGAAGAACGGTGGCAAAAAGAAGAACAAGCAGAAGAACAAAGGAGACAAAGATAATGCAGAGCCACCAAAGACACAAGTTTACCTACCAAAACCAATCAGAGCGAAGGCTTTGTATTTGCCAAGAACAGATAGTAATAACACATACACCTTTGATTCCAACTCGGCAAGTGCATCAACAAACCAAGAAAAGGAAGAAAGCCCCTTGACAAAAGAATCAAACTTGGCCAGTGAATTTAGAAATGTGGGAGAAAGTGATGATTTTGGCTTCTTCAGTGAGGACCATGACCTGGTCAATGCCTCTGATATGGAATGCCACTCTTATTTTCCTTCAGATCATGGCTCTCTGCAACAACTGTATGAAGAATATTACCACCTCCTGAACATGGATCATAGCCAATTCATCGAAATGAGTTCATTTGGGGAATCTCTATTGGTGTGA 870 0.4126 MGRAPCCSKVGLHKGPWTPKEDALLTKYIQAHGEGQWKSLPKKAGLLRCGKSCRLRWMNYLRPDIKRGNITPEEDDLIIRMHSLLGNRWSLIAGRLPGRTDNEIKNYWNTHLCKKLKNQTGEDTETPNSLESPQQEPASGSKKKKNGGKKKNKQKNKGDKDNAEPPKTQVYLPKPIRAKALYLPRTDSNNTYTFDSNSASASTNQEKEESPLTKESNLASEFRNVGESDDFGFFSEDHDLVNASDMECHSYFPSDHGSLQQLYEEYYHLLNMDHSQFIEMSSFGESLLV 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium8006g00001 289 MobiDBLite consensus disorder prediction 122 141 - -
Vium8006g00001 289 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vium8006g00001 289 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vium8006g00001 289 CDD SANT 16 61 IPR001005 -
Vium8006g00001 289 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vium8006g00001 289 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vium8006g00001 289 MobiDBLite consensus disorder prediction 119 215 - -
Vium8006g00001 289 MobiDBLite consensus disorder prediction 184 207 - -
Vium8006g00001 289 Gene3D - 14 66 - -
Vium8006g00001 289 Gene3D - 69 136 - -
Vium8006g00001 289 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vium8006g00001 289 FunFam Myb transcription factor 11 67 - -
Vium8006g00001 289 CDD SANT 71 112 IPR001005 -
Vium8006g00001 289 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 218 - -
Vium8006g00001 289 SMART sant 66 114 IPR001005 -
Vium8006g00001 289 SMART sant 13 63 IPR001005 -
Vium8006g00001 289 FunFam MYB transcription factor 68 128 - -
Vium8006g00001 289 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vium8006g00001 289 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium8006g00001 Vium-Chr8006 2973 4372 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium8006g00001 4 142 MYB Transcription Factor Family AT3G13540 63.889 7.97e-65 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vium8006g00001 Myb_DNA-binding 9.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium8006g00001 K09422 - gmx:100101857 464.151