Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7990g00004 ATGGCCACCACTTCCACCTCTCTCCTCTTCCTCCTCTTCTCTCTCCTCACCCCCTCTCTCATTTCTTCTTCACCGCTTCAAAACCCTGAATTGGTTGCCCAAGAAGTTAACAGGAAAATCAATGCCTCTGTGGCCAGGAGGAATTTGGGTTACCTGTCATGTGGGACAGGTAACCCAATAGACGACTGTTGGAGGTGTGACCCGAACTGGGAGAAGAACAGGCAGAGGCTGGCGGATTGTGCAATTGGGTTTGGGAAAAACGCGATTGGAGGAAAGAACGGGAAAATCTACGTGGTGACGGATTCAAGCGACGATAACGCGGTGACGCCTAAGCCGGGGACGCTCCGTTACGCGGTGATTCAGGAGGAGCCTCTTTGGATCATATTCGCGAGGGACATGGTGATTAAGCTGAAGGAGGAGCTTATAATGAACTCGTTCAAGACGATCGACGGAAGAGGAGCCAGCGTGCACATTGCGGGTGGGCCATGCATTACGATACAGTATGTGACGAATGTTATAATCCACGGGATAAATATTCACGACTGTAAGCAAGGGGGGAATGCTATGGTGCGGGACTCCCCAAGGCACTACGGGTGGAGGACCGTATCCGACGGTGATGGCGTGTCGATCTTTGGAGGAAGCCACATATGGGTTGACCACTGCTCCTTGTCTAACTGCAATGATGGGCTGATCGATGCCATTCACGGGTCTACCGCCATTACCATCTCCAACAATTACATGACTCACCATGATAAAGTGATGCTTTTGGGCCACAGCGACGCCTACACTCAAGACAAGAACATGCAGGTCACAATTGCTTTCAACCACTTTGGGGAAGGGCTCGTTCAGAGGATGCCAAGGTGTAGGCATGGATATTTTCATGTGGTGAACAATGACTACACCCACTGTGAAATGTATGCCATTGGAGGAAGTGCCGACCCAACCATCAACAGTCAAGGAAATAGGTTCGTTGCACCCGATGACAGATTCAGCAAAGAGGTGACAAAGCATGAGGATGCACCAGAGAATGAATGGAAAGGGTGGAATTGGAGGTCAGAAGGAGACCTTATGGTAAACGGTGCGTTTTTCACAGCATCGGGAGCAGGAGCCTCCTCTAGCTATGCAAGAGCCTCTAGCCTGAGCGCGAGGCCATCTTCGCTGGTGGGCTCCATTACGACCAATGCGGGTGCACTCAACTGCAGGAAGGGTTCCCGCTGCTGA 1221 0.5152 MATTSTSLLFLLFSLLTPSLISSSPLQNPELVAQEVNRKINASVARRNLGYLSCGTGNPIDDCWRCDPNWEKNRQRLADCAIGFGKNAIGGKNGKIYVVTDSSDDNAVTPKPGTLRYAVIQEEPLWIIFARDMVIKLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNVIIHGINIHDCKQGGNAMVRDSPRHYGWRTVSDGDGVSIFGGSHIWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDAYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHCEMYAIGGSADPTINSQGNRFVAPDDRFSKEVTKHEDAPENEWKGWNWRSEGDLMVNGAFFTASGAGASSSYARASSLSARPSSLVGSITTNAGALNCRKGSRC 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7990g00004 406 FunFam Pectate lyase 57 399 - -
Vium7990g00004 406 Gene3D - 57 399 IPR012334 -
Vium7990g00004 406 PANTHER PECTATE LYASE 18-RELATED 27 404 IPR045032 GO:0030570
Vium7990g00004 406 PRINTS Pollen allergen Amb family signature 284 303 IPR018082 -
Vium7990g00004 406 PRINTS Pollen allergen Amb family signature 306 325 IPR018082 -
Vium7990g00004 406 PRINTS Pollen allergen Amb family signature 204 225 IPR018082 -
Vium7990g00004 406 PRINTS Pollen allergen Amb family signature 348 372 IPR018082 -
Vium7990g00004 406 PRINTS Pollen allergen Amb family signature 377 400 IPR018082 -
Vium7990g00004 406 PRINTS Pollen allergen Amb family signature 104 129 IPR018082 -
Vium7990g00004 406 PRINTS Pollen allergen Amb family signature 80 97 IPR018082 -
Vium7990g00004 406 PRINTS Pollen allergen Amb family signature 140 156 IPR018082 -
Vium7990g00004 406 SUPERFAMILY Pectin lyase-like 39 401 IPR011050 -
Vium7990g00004 406 Pfam Pectate lyase 139 323 IPR002022 -
Vium7990g00004 406 SMART amb_all 132 329 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7990g00004 Vium-Chr7990 45527 47552 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7990g00004 9 406 Polysaccharide Lyase AT5G63180 79.250 0.0 663
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7990g00004 K01728 - gmx:100101868 734.947