Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7990g00003 ATGGATGGTAGGAGACATTCTGTTGATATTCCTATTTCTAAAACTCTTGTGGCACTGAGGAGAGTAAGGTCATTGAGGGATCCATCAACTCATGGTGTCAGCAAACTCTCTCCTTTGATTCATGATGGAGATTGGGACAATGGTTCTAGTAATGGGGTTTCTCTGAGTTTGAGATTTCTCAACGGTTCTCATGCTGGTCATTGCGACGGTAATGGCTTTTCAAGATCAAACAGTTTAGACTTTAAGGATCTGAGAGAGCAGGAAACTGCTGAGTTAGAATTGAAAATGTTGAACTATAAGATGAACTATTGTGGGATCTCTCGTCAGGAAGGGCAACGAGATGATGAACATGTGTACTCTAATCCTAAGCAGCAAGGTATTTCTGGAGATAAATCGCCAAATGAAAGCAGTTGTAGTAACCATGAAGGTGAAAGATTGGATTTGGTTGCCATTACGCCTCCATGTAATCATTTGAGGGATGGTGAGTTATGCTATTTATCAACTGCATTGAGAGTAGATCACTCAAAGTCAGCTAGAAAATCACTACGCAAGAATCAAATGAAACCATCTGGAGTGGTGGGTGATATAGCAAGCCATGTAGGAAGTCAACAGTGCCTTTCTGTTTATGATTCTATCTCAGCTCGTCGTAGCTTGGAACTTGTCACTCAAGATGTTGACGCTTTAGATAATCGCCATGGATGTGGATTAAGGAGTTGTTGGTCAAAGTCACCAAGGTTTAGAGAATCAAATCATTATTCCGAAATAGAAGGTCTTCCCTTGATATTGCAGCACGCTAATGAAACGGATCTCAATGGACGTAGAAACATTGGACACATTGGTGGTGAAATTAGTCCAAATATGGAAACTCCTAGAAGTTTATCTGTGAAATTCAGGCCAAAATCTTTTGATGATTTGGTTGGACAAAATGTGATAGGTAAGTCTCTTTTGGGTGCTATCTATAGAGGAAGGATAGCATCATTTTATCTCTTCCATGGTCCACGCGGCACGGGCAAGACCTCAGCCTCTAGGATATTTGCTGCTGCACTGAATTGCCTATCATCTGTGGAGCAAAAGCCTTGTGGTCTGTGTAGAGAATGCGTTTTGTTCTTCTCTGGAAGAAATAAGAATGTTAGTGAAGTAGATTCTTTGAGAATCAATCGTGCAGAGAAAGTTAAATCCCTTGTTAAGCATGCATGCGTTCCTCCAGTTTCTTCAAGCTTTAAAGTGTTCATTGTTGATGAGTGCCAGTTATTGCATAGGGAAACATGGGCGTGCCTTTTGAATAGTCTAGAGAATGTTTCTCCTCATGTGGTTTTTGTGATGATCACTCCTGATTTGGATAACGTTCCTCGGAGTGCAGCATCACGGGCTCAGAGGTATCACTTTGCAAAGATTAAAGATGTTGACATCGTAAGAAGATTAGAAACAATATGTGTCGAAGAAGGTCTTGAATCTGAACAAGTTGCTTTGGACTTCATTGCTGCTAGATCCTGTGGTTCTCTTAGGGATGCAGAAACTATGCTTGATCAACTGAGTTTGCTTGGTAAAAAGATCACAGTATCCTTAGTCCACGAGCTAACTGGGATCATTTCTGATGATGAATTGCTTGATTTGTTGGACCTAGCTTTATCCTCTGACACTTCAAATACAGTTATACGAGCCCGGGAACTTGTCAGAACAAGGATAGATCCTTTACAACTTATATCACAGTTGGCAAATCTTATTATGGACATTCTGTCAGGGAAATGTGAACTTCGTGGCTCTGAAATAAAAACAGGATTTTATAATAGATATACATCGGAAGCAGACCTGCAGAAACTAAGTCATGCATTAAGAATACTGTCTGAATCAGAGAAGCAGTTGAGAATTTCCAAGAATCAAACAACATGGTTCACTGCAGCTCTTCTGCAGCTGAGCTCCGTTGAATATTCATCGGCTAATGCAAATACTACGAAGTTGTGTACACGACCTGCTTCCGTTAGAGATGGTGATATCTGCAGTACATCTCCTAAAGGTGACAGCTTGGAGCATCTTACCACAACAGATCAATGTGATGATAAGTCATATAGGTTAGCAGTGCAGGAGGATCACAAAGGAACGTTGGATTCTATATGGTATAAAGCTACTGAGATGTGTCAATCTAGCAGGCTCAGAACTTTTCTCAGGAAACAAGGGAAGTTGTCTTCAGTTTGTATTAGTCAAGGCCGTGCAGTTGCGGAGCTGGAGTTCCAGCATCGAGACTATGTAAGTAGGGCTGAGAAGTCATGGAAGTTGATTGCAAGTTCTCTGCAGTTCGTATTGGGCTGTAACCTTGAGCTCAGAATCAATTATGTTCCGTCATGTGCCTCAGATTCTATTTATGCTAAATTGAAGAGGTCATCCATCAATTTCTTCGGTTGTTCCCGCAGAATTCGTTGGAAATCTTTATCATCTAATGAACAAGGAAGTGAATCAGACTATGCTGAATACACCTCTCAAAAGCCCACGATGAATGTTCAAACGCAAACCTGTTCCTCTGATTATGAACCCCGGGTGCCACCAGTCGAGGCCGGCAATGGAATTGGAATGCAGGTTATAACAGCTTTGAGAAGTAGCGAAGGAAATTTGCTAAGCTCAGGGAAAATGCTTTTGAATAGGCCAGATCAAGAGACTCCAAGAATTTCTTGTTCGAGAGTTGATTCTTGCACGGAAGAGGGATGCAATTATGAACACATAGCTTCATCAACCCCTGATTTAGATAATCAGTCCGACTGTTTTCCTAGAACCCGCTGGCTTCATAAAAAGTTTGGTTCTTCTTATGCACCACAGCAGAGATTTTGTTTTATCTATGCCCAAGTTCAATTGTTCTGA 2850 0.4119 MDGRRHSVDIPISKTLVALRRVRSLRDPSTHGVSKLSPLIHDGDWDNGSSNGVSLSLRFLNGSHAGHCDGNGFSRSNSLDFKDLREQETAELELKMLNYKMNYCGISRQEGQRDDEHVYSNPKQQGISGDKSPNESSCSNHEGERLDLVAITPPCNHLRDGELCYLSTALRVDHSKSARKSLRKNQMKPSGVVGDIASHVGSQQCLSVYDSISARRSLELVTQDVDALDNRHGCGLRSCWSKSPRFRESNHYSEIEGLPLILQHANETDLNGRRNIGHIGGEISPNMETPRSLSVKFRPKSFDDLVGQNVIGKSLLGAIYRGRIASFYLFHGPRGTGKTSASRIFAAALNCLSSVEQKPCGLCRECVLFFSGRNKNVSEVDSLRINRAEKVKSLVKHACVPPVSSSFKVFIVDECQLLHRETWACLLNSLENVSPHVVFVMITPDLDNVPRSAASRAQRYHFAKIKDVDIVRRLETICVEEGLESEQVALDFIAARSCGSLRDAETMLDQLSLLGKKITVSLVHELTGIISDDELLDLLDLALSSDTSNTVIRARELVRTRIDPLQLISQLANLIMDILSGKCELRGSEIKTGFYNRYTSEADLQKLSHALRILSESEKQLRISKNQTTWFTAALLQLSSVEYSSANANTTKLCTRPASVRDGDICSTSPKGDSLEHLTTTDQCDDKSYRLAVQEDHKGTLDSIWYKATEMCQSSRLRTFLRKQGKLSSVCISQGRAVAELEFQHRDYVSRAEKSWKLIASSLQFVLGCNLELRINYVPSCASDSIYAKLKRSSINFFGCSRRIRWKSLSSNEQGSESDYAEYTSQKPTMNVQTQTCSSDYEPRVPPVEAGNGIGMQVITALRSSEGNLLSSGKMLLNRPDQETPRISCSRVDSCTEEGCNYEHIASSTPDLDNQSDCFPRTRWLHKKFGSSYAPQQKXFCFIYAQVQLF 950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7990g00003 950 NCBIfam DNA polymerase III subunit gamma/tau 292 638 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Vium7990g00003 950 Pfam DNA polymerase III, delta subunit 309 465 - -
Vium7990g00003 950 SMART AAA_5 324 472 IPR003593 GO:0016887
Vium7990g00003 950 MobiDBLite consensus disorder prediction 111 141 - -
Vium7990g00003 950 FunFam DNA polymerase III subunit gamma/tau 466 528 - -
Vium7990g00003 950 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 315 514 IPR027417 -
Vium7990g00003 950 CDD HLD_clamp_pol_III_gamma_tau 465 528 IPR045085 -
Vium7990g00003 950 Gene3D - 284 463 IPR027417 -
Vium7990g00003 950 SUPERFAMILY post-AAA+ oligomerization domain-like 535 636 IPR008921 GO:0003677|GO:0006260
Vium7990g00003 950 MobiDBLite consensus disorder prediction 121 136 - -
Vium7990g00003 950 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 295 716 - -
Vium7990g00003 950 Gene3D - 467 528 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7990g00003 Vium-Chr7990 22414 28410 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7990g00003 283 590 Core DNA Replication Machinery Family AT1G21690 23.077 7.28e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7990g00003 - - gmx:100819111 1090.49