Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7990g00002 ATGGCTTCGAGCGAGGGGTTTCTGACGGACGGGCAGAGGGAAATGCTAAAAATTGCGAGCCAAAATGCGGAGAATCTGTCTTCGTCTCCAAAATCCCCGTCGTCCTTGATTTCCGACCATCATGTGAAAGCCCCAGCTGGTGGTAAGGCACAAACCTCTGGGATAGCTGTGAGGCATGTGCGTCGGTCACACTCAGGGAAGTATGGGCGGGTGAAGAAAGATGGTGCTGGTGGTAAGGGCACTTGGGGGAAATTGCTTGATACTGATGTTGTTTCTCACATAGATCGGAATGATCCAAATTATGACAGCGGCGAGGAACCCTATCAACTAGTTGGATCTACTGTTACTGACCCCTTGGATGAATTCAAGAAAGCAGTGGTATCCATCATAGAGGAATATTTCAGTAATGGGGATGTGGAATTGGCAGCATCCGACCTCAGAGAACTTGGCTCAAGTGAATATTATCCATACTTCATTAAACGCCTTGTGTCCTTGGCAATGGACAGACACGATAAGGAGAAAGAAATGGCTTCTGTTCTACTTTCTGCATTGTATGCTGACGTCATCAGCCCTGCACAGATCAGGGATGGGTTTTTTATTCTTCTTGAATCTGCTGATGATCTTGCTGTGGATATACTGGATGCAGTTGATATCCTTGCATTATTCTTGGCACGGGCTGTTGTTGATGACATTCTTCCTCCAGCCTTTCTTGCCAGGGCAATGAAGGCTCTTCCAGATTCTTCCAAGGGAGTTCAGGTAATCCAGACAGCTGAAAAGAGTTATCTCTCAGCTCCACACCATGCAGAGCTTGTGGAAAGGCGATGGGGTGGTAGCACTCATATAACTGTTGAAGAAGTGAAGAAGAAGATAACTGATTTACTTAGAGAATATGTGGATAGTGGTGACACATTGGAAGCCTGTAGGTGTATACGTGAGTTGGGGGTTTCATTCTTCCATCATGAGGTTGTTAAGAGGGCTTTGGTACTTGCCATGGAGATTCGTTCAGCAGAACCACTAATGTTAAAATTATTAAAAGAAGCAGCAGAAGAAGGACTTGTTAGTTCCAGCCAAATGGTGAAGGGTTTTTCTCGTTTAGCAGAATCCCTAGATGATCTTGCTCTTGATATTCCATCAGCTAAGGCACTGTTTCAGTCATTTGTCCCCAAGGCAATATCTGAAGGATGGCTTGATGCTTCACTTACCAAACCTGCAACTGAAGATGGTGAAATACAAGTTGAAGACGAGGAGGTGAGGAAGTACAAAAAGGAATGTGTAACTATGATTCATGAGTATTTTCTTTCTGATGACATCCCTGAACTGATTCGAAGTCTTGAAGATCTTGGAGCCCCTGAATATAACCCGATATTTTTGAAGAAGTTAATTACTCTGGCTATGGACCGAAAGAACAGAGAAAAGGAAATGGCATCTGTACTTCTATCCGCACTTCACATAGAGATATTCTCAACTGAGGATATAGTTAATGGTTTTGTCATGCTTCTGGAAACTGCGGAAGATACAGCACTGGATATACTGGACGCTTCAAATGAGCTTGCTCTGTTTTTAGCTCGGGCTGTTATTGACGATGTATTGGCCCCGCTGAATTTGGAAGAAATTGGCAGCAGGTTGCCACCAAAATGCAGCGGTAGTGAAACTGTGCGTATGGCTCGGTCACTCATAGCTGCTCGTCATGCTGGAGAGAGGCTGTTGAGATGCTGGGGTGGAGGCACGGGATGGGCTGTGGAGGATGCGAAGGACAAGATCATGAAGCTCTTGGAAGAGTACGAAAGTGGAGGGGTTGTCAGTGAAGCTTGCCAATGTATCCGTGACCTGGGAATGCCTTTCTTTAACCACGAGGTAGTGAAGAAAGCATTGATTATGGCCATGGAGAAAAAGAATGATCGAATGCTAGATCTGCTGCAGGAGTGCTATAGTGAGGGCCTGATCACCATTAATCAGATGACTAAAGGTTTCACCCGAATAAAGGATGGTCTTGATGATCTGGCTCTGGACATTCCAAACGCAAAGGAGAAATTTGGCTTCTACGTGGAGCATGCTCAGTCGAAGGGCTGGCTTCTACCATCATTTGACTCGCCTACTACAGATGCCTAA 2109 0.4533 MASSEGFLTDGQREMLKIASQNAENLSSSPKSPSSLISDHHVKAPAGGKAQTSGIAVRHVRRSHSGKYGRVKKDGAGGKGTWGKLLDTDVVSHIDRNDPNYDSGEEPYQLVGSTVTDPLDEFKKAVVSIIEEYFSNGDVELAASDLRELGSSEYYPYFIKRLVSLAMDRHDKEKEMASVLLSALYADVISPAQIRDGFFILLESADDLAVDILDAVDILALFLARAVVDDILPPAFLARAMKALPDSSKGVQVIQTAEKSYLSAPHHAELVERRWGGSTHITVEEVKKKITDLLREYVDSGDTLEACRCIRELGVSFFHHEVVKRALVLAMEIRSAEPLMLKLLKEAAEEGLVSSSQMVKGFSRLAESLDDLALDIPSAKALFQSFVPKAISEGWLDASLTKPATEDGEIQVEDEEVRKYKKECVTMIHEYFLSDDIPELIRSLEDLGAPEYNPIFLKKLITLAMDRKNREKEMASVLLSALHIEIFSTEDIVNGFVMLLETAEDTALDILDASNELALFLARAVIDDVLAPLNLEEIGSRLPPKCSGSETVRMARSLIAARHAGERLLRCWGGGTGWAVEDAKDKIMKLLEEYESGGVVSEACQCIRDLGMPFFNHEVVKKALIMAMEKKNDRMLDLLQECYSEGLITINQMTKGFTRIKDGLDDLALDIPNAKEKFGFYVEHAQSKGWLLPSFDSPTTDA 702
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7990g00002 702 SUPERFAMILY ARM repeat 417 576 IPR016024 -
Vium7990g00002 702 FunFam Programmed cell death protein 4 271 407 - -
Vium7990g00002 702 ProSiteProfiles MI domain profile. 285 406 IPR003891 -
Vium7990g00002 702 SMART ma3_7 583 692 IPR003891 -
Vium7990g00002 702 SMART ma3_7 122 233 IPR003891 -
Vium7990g00002 702 SMART ma3_7 420 531 IPR003891 -
Vium7990g00002 702 SMART ma3_7 286 397 IPR003891 -
Vium7990g00002 702 FunFam programmed cell death protein 4 409 563 - -
Vium7990g00002 702 PANTHER PROGRAMMED CELL DEATH 4 3 696 IPR039778 GO:0045892
Vium7990g00002 702 Gene3D - 407 563 - -
Vium7990g00002 702 Gene3D - 114 262 - -
Vium7990g00002 702 SUPERFAMILY ARM repeat 579 695 IPR016024 -
Vium7990g00002 702 ProSiteProfiles MI domain profile. 582 701 IPR003891 -
Vium7990g00002 702 SUPERFAMILY ARM repeat 119 279 IPR016024 -
Vium7990g00002 702 SUPERFAMILY ARM repeat 282 403 IPR016024 -
Vium7990g00002 702 MobiDBLite consensus disorder prediction 15 36 - -
Vium7990g00002 702 ProSiteProfiles MI domain profile. 419 540 IPR003891 -
Vium7990g00002 702 Pfam MA3 domain 584 691 IPR003891 -
Vium7990g00002 702 Pfam MA3 domain 421 530 IPR003891 -
Vium7990g00002 702 Pfam MA3 domain 122 233 IPR003891 -
Vium7990g00002 702 Pfam MA3 domain 286 397 IPR003891 -
Vium7990g00002 702 ProSiteProfiles MI domain profile. 121 242 IPR003891 -
Vium7990g00002 702 MobiDBLite consensus disorder prediction 1 55 - -
Vium7990g00002 702 Gene3D - 570 698 - -
Vium7990g00002 702 Gene3D - 272 405 - -
Vium7990g00002 702 FunFam programmed cell death protein 4 113 264 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7990g00002 Vium-Chr7990 9929 14802 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7990g00002 586 682 Eukaryotic Initiation Factors Gene Family AT5G57870 33.000 1.30e-09 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7990g00002 - - gmx:100809081 1298.11