Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7984g00001 ATGTCAGGTTCCGATAGCAGCCGAGCCCGTGTGCTAGCCGGCTTGACCCTCGACGACGTGTTAGCGAACCAGAAGAGACCTTCCTCGACGCCGCCCAGGGAACCACCACCGCCTAAGAACCGAACCCTTCTTGACATCATCAAAGACGACGAGTCCAACAAAAAGGATCGCAGATCTTGGAAAGCCTTCAAGGACAAGCTTAGGCTAAAGCGCGCAGGGTCTGCCTGGATATCCACAATTCATATCCCTACTTCGGATGTTCCTATTCCTAACCCGAATAGTAGAATCTTTACCCAGTTTGGTCGCCGTAACTCGGTCCGATTCCCCACTCAGACTACAACTCCGACTCAGTCTCTGACTCAGACTCCAACTCCGACTCAGACTCCATCTCCAACTCAGTCCGACTCGGACATGTCATCGCACTACATGACTCACCAGGTCGAGGACCTCAACCCCGCCACCGAAGACTCCGGTCCTCCGGCCACCGCACCCCCGGCAATCCGCCCCACGTTTAGCCGCCGCGGCTCCACCCGCTTCACCGGCGAAACCGCCGACAACAACACCGCCGGGACCCTGCGGCCGCAGCTCTCGTTGCGGAGTTCGGCCAACATGCCGACGGCAGAGCCGTACCGGCGGGGGAGGGTGGTGACCTTCCGCGACAGCTTCGACGACGAGGATGGGGAGGAGGACGGGGAGAAGCCGGGGGAGGGGAGGGCGCTGTCAGCGAGGGAGGCGGTTGCGGCGCAGGAGGCGTCGGAAGCGGCGGCGCAGGAGGCGGAGGCGGAGGAGGAGCAGGCGCCGGTGATGATGTCGCTGATGGACTTGTTAGAGGAGACTGACAGGGAAATGGGGCTTGAAGGATCAAGGTATATATTGAGTGATGAGGAAGATTTTGATGAGGATGCAGATGATGACGGTGAAGATGGAGATGGAGGGGGTTCCATGGAGCACACTTGCTGTATTTGCATGGTCAGGCATAAGGCTGCTTCTTTTATACCATGTGGCCACACTTTCTGCAGGATGTGTTCAAGGGAGCTTATGGTTAGCAGAGGGAATTGCCCACTCTGCAACAATTTCATTTTGGAGATTCTTGAAATTTTTTAA 1104 0.5716 MSGSDSSRARVLAGLTLDDVLANQKRPSSTPPREPPPPKNRTLLDIIKDDESNKKDRRSWKAFKDKLRLKRAGSAWISTIHIPTSDVPIPNPNSRIFTQFGRRNSVRFPTQTTTPTQSLTQTPTPTQTPSPTQSDSDMSSHYMTHQVEDLNPATEDSGPPATAPPAIRPTFSRRGSTRFTGETADNNTAGTLRPQLSLRSSANMPTAEPYRRGRVVTFRDSFDDEDGEEDGEKPGEGRALSAREAVAAQEASEAAAQEAEAEEEQAPVMMSLMDLLEETDREMGLEGSRYILSDEEDFDEDADDDGEDGDGGGSMEHTCCICMVRHKAASFIPCGHTFCRMCSRELMVSRGNCPLCNNFILEILEIF 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7984g00001 367 MobiDBLite consensus disorder prediction 102 238 - -
Vium7984g00001 367 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 296 367 IPR013083 -
Vium7984g00001 367 MobiDBLite consensus disorder prediction 15 56 - -
Vium7984g00001 367 MobiDBLite consensus disorder prediction 102 151 - -
Vium7984g00001 367 CDD RING-HC 318 356 - -
Vium7984g00001 367 SMART ring_2 319 356 IPR001841 -
Vium7984g00001 367 ProSiteProfiles Zinc finger RING-type profile. 319 357 IPR001841 -
Vium7984g00001 367 SUPERFAMILY RING/U-box 318 363 - -
Vium7984g00001 367 PANTHER OS01G0917900 PROTEIN 8 367 - -
Vium7984g00001 367 Coils Coil 242 265 - -
Vium7984g00001 367 MobiDBLite consensus disorder prediction 173 204 - -
Vium7984g00001 367 Pfam Zinc finger, C3HC4 type (RING finger) 316 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7984g00001 Vium-Chr7984 9369 10863 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7984g00001 7 367 C3H Transcription Factor Family AT3G07120 33.938 1.11e-50 171
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7984g00001 - - var:108328735 587.415