Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7981g00001 ATGGTAAATAATATCGTTACATCATCACTTTGTGTTAATGATTGTGGTTTTTATGGTTCTCCTACAACAAATAATCTTTGTTCAAATTGTTATAAAGATTATCTCGCCAAATCAAAGGATTTATTATCGACAAGTGAGAAGAATGAGAGAAAGAGATGCAAGAGTTGCAACAAGAAGATTGGGTTATTAGGGTTTCAATGTCGTTGTGGAAATGTTTTTTGTGGAACACACAGATATCCAGAAATGCACTCATGCGAAATAGATTTTAAGAAAATTGGTCGTGAAGTTTTAATTCAACAAAATCCTTTATGCAAAGCGGATAAACTAAAGCATAGGATTTAG 342 0.3216 MVNNIVTSSLCVNDCGFYGSPTTNNLCSNCYKDYLAKSKDLLSTSEKNERKRCKSCNKKIGLLGFQCRCGNVFCGTHRYPEMHSCEIDFKKIGREVLIQQNPLCKADKLKHRI 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7981g00001 113 Pfam AN1-like Zinc finger 53 88 IPR000058 GO:0008270
Vium7981g00001 113 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 10 41 - -
Vium7981g00001 113 PANTHER AN1-TYPE ZINC FINGER PROTEIN 9 38 - -
Vium7981g00001 113 ProSiteProfiles Zinc finger AN1-type profile. 47 93 IPR000058 GO:0008270
Vium7981g00001 113 SMART AN1_Zf_4 53 90 IPR000058 GO:0008270
Vium7981g00001 113 Pfam A20-like zinc finger 9 32 IPR002653 GO:0003677|GO:0008270
Vium7981g00001 113 Gene3D - 26 108 IPR035896 -
Vium7981g00001 113 SUPERFAMILY AN1-like Zinc finger 42 107 IPR035896 -
Vium7981g00001 113 ProSiteProfiles Zinc finger A20-type profile. 5 39 IPR002653 GO:0003677|GO:0008270
Vium7981g00001 113 FunFam Zinc finger AN1-type containing 6 31 108 - -
Vium7981g00001 113 SMART A20_3 8 32 IPR002653 GO:0003677|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7981g00001 Vium-Chr7981 11152 15716 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7981g00001 7 110 C2H2 Transcription Factor Family AT3G52800 37.580 1.88e-29 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7981g00001 - - pvu:PHAVU_004G110800g 155.606