Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7974g00001 ATGGGGTCGCCAAGAGGAACAACTCTTCTCTTTTTCACATTGTTCTTCTTTTGGAGCTTCGCAGATGCTTTGCTTTCTCCTAAGGGAGTGAACTTCGAAGTGCAAGCCTTAATGAGCATAAAACGCTCTCTAGAGGATCCACATGGTGTTCTAGACAATTGGGATGGGGATGCAGTCGATCCATGTAGCTGGACTATGGTCACATGTTCTTCAGATAACTTGGTCGTTGGACTGGGCACTCCAAGTCAAAGTCTATCTGGTACTCTATCTCCGAGCATAGGCAACTTAACCAACCTTCAGATTGTGCTGCTACAGAATAACAACATAAGTGGACAAATCCCATCAGAGTTGGGAAAACTTCCTAAGCTTCAGACCCTTGATCTCTCAAACAACTTCTTCAGAGGGGAGATTCCTCAATCTCTGGGACACCTGAAAAGCCTCCAATACCTGAGGCTCAATAACAACACTCTTGTTGGTGAATGCCCAGAGTCTCTGGCTAACATGACCCAACTCAATTTTCTTGACTTGTCATACAACAATCTTAGTGGCCCGGTGCCCAGAATTTTAGCCAAATCATTCAGCATTGTTGGAAACCCCATTGTTTGTGCAACGGGAAAAGAGCCAAACTGTCATGGGATGACATTGATGCCTATGTCCATGAACTTGAACAATACCGAACATGCTTTACAATCAGGCAGACCAAAAACTCATAAAATGGCAATTGCCTTTGGCTTGAGTTTGGGATGTCTCTGCCTCATAGTTATCGGTTTTGGAGGCGTTATTTGGTGGAGACACAAGCACAATCAACAAGCATTCTTCGATGTTAAAGACCGGCATCATGAAGAAGTCTACCTCGGAAACTTGAAGAGGTTCCAATTCAGAGAACTCCAGATTTCTACTCACAACTTCAGCAGCAAAAACATACTAGGAAAAGGTGGTTTTGGAAATGTCTACAAAGGAGTTCTCTCTGATGGTACTCTTGTAGCTGTCAAGAGGCTTAAAGATGGCAATGCCATTGGAGGAGAGATTCAATTTCAGACAGAAGTTGAAATGATCAGCTTGGCAGTGCACCGAAACCTCCTCAGACTCTACGGATTTTGCATGACACCAACAGAAAGGCTTTTGGTTTATCCATACATGTCCAATGGCAGTGTTGCTTCTCGTCTCAAGGGTAAACCAGTGCTGGACTGGGGCACTAGGAAGCACATTGCTTTGGGAGCAGCAAGAGGACTACTGTATCTTCATGAGCAATGTGATCCAAAGATCATTCACAGGGATGTGAAAGCTGCAAACATATTGCTTGATGACTACTGTGAAGCTGTGGTTGGAGATTTTGGGTTGGCAAAGCTTTTGGATCACCAAGACTCACACGTCACAACTGCAGTGAGAGGCACAGTGGGGCATATTGCCCCAGAGTACCTTTCCACAGGACAGTCCTCTGAGAAGACTGATGTTTTTGGATTTGGCATTCTCCTCCTTGAATTGATCACAGGCCAGAGAGCTCTAGAGTTTGGAAAATCAGCCAACAACAAAGGAGCCATGCTTGATTGGGTAAAGAAAATTCATGTGGAGAAAAAGCTTGAAATGCTGGTAGACAAGGATCTGAAGAACAACTATGACAGAATTGAACTTGAGGAAATGGTTCAAGTGGCCCTCTTGTGTACTCAGTATCTTCCAGGGCATAGGCCTAAAATGTCTGAAGTGGTTCGCATGCTCGAAGGTGATGGACTAGCAGAAAGATGGGAAGCTTCACAGAGAGTTGACACAACCAAGTTCAAACCCCAAGAGTCATCTTCATCAGATAGGTATTCTGATCTCACTGATGACTCTTTGTTGTTAGTCCAAGCCATGGAGCTCTCAGGACCCAGATGA 1872 0.4455 MGSPRGTTLLFFTLFFFWSFADALLSPKGVNFEVQALMSIKRSLEDPHGVLDNWDGDAVDPCSWTMVTCSSDNLVVGLGTPSQSLSGTLSPSIGNLTNLQIVLLQNNNISGQIPSELGKLPKLQTLDLSNNFFRGEIPQSLGHLKSLQYLRLNNNTLVGECPESLANMTQLNFLDLSYNNLSGPVPRILAKSFSIVGNPIVCATGKEPNCHGMTLMPMSMNLNNTEHALQSGRPKTHKMAIAFGLSLGCLCLIVIGFGGVIWWRHKHNQQAFFDVKDRHHEEVYLGNLKRFQFRELQISTHNFSSKNILGKGGFGNVYKGVLSDGTLVAVKRLKDGNAIGGEIQFQTEVEMISLAVHRNLLRLYGFCMTPTERLLVYPYMSNGSVASRLKGKPVLDWGTRKHIALGAARGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHQDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQRALEFGKSANNKGAMLDWVKKIHVEKKLEMLVDKDLKNNYDRIELEEMVQVALLCTQYLPGHRPKMSEVVRMLEGDGLAERWEASQRVDTTKFKPQESSSSDRYSDLTDDSLLLVQAMELSGPR 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7974g00001 623 Pfam Leucine rich repeat 122 181 IPR001611 GO:0005515
Vium7974g00001 623 Gene3D Transferase(Phosphotransferase) domain 1 380 592 - -
Vium7974g00001 623 SUPERFAMILY Protein kinase-like (PK-like) 280 573 IPR011009 -
Vium7974g00001 623 Gene3D Phosphorylase Kinase; domain 1 272 379 - -
Vium7974g00001 623 Pfam Leucine rich repeat N-terminal domain 33 70 IPR013210 -
Vium7974g00001 623 ProSiteProfiles Protein kinase domain profile. 303 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7974g00001 623 ProSitePatterns Protein kinases ATP-binding region signature. 309 331 IPR017441 GO:0005524
Vium7974g00001 623 SUPERFAMILY L domain-like 33 195 - -
Vium7974g00001 623 Gene3D Ribonuclease Inhibitor 30 212 IPR032675 -
Vium7974g00001 623 SMART serkin_6 303 558 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7974g00001 623 FunFam Putative LRR receptor-like serine/threonine-protein kinase 30 212 - -
Vium7974g00001 623 FunFam Somatic embryogenesis receptor kinase 1 272 379 - -
Vium7974g00001 623 FunFam Somatic embryogenesis receptor-like kinase 1 380 592 - -
Vium7974g00001 623 Pfam Protein kinase domain 304 569 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7974g00001 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 422 434 IPR008271 GO:0004672|GO:0006468
Vium7974g00001 623 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 10 583 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7974g00001 Vium-Chr7974 654 4388 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7974g00001 14 623 Receptor kinase-like Gene Family AT5G16000 78.606 0.0 994
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Vium7974g00001 Pkinase 2.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7974g00001 - - gmx:100798412 1174.07