Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7970g00001 ATGTCGCTGAGGAAGGTCTTTCGCACCCGCAAGTTCTCGAGATCGTTCAAGGAGGCGCCGGCGGTGGGGACCGCCGAGGGCGGGGTAACCGGAAACGGGGTTGAACACGCGCACGAAGATGGGTGGTCCAACATGCTGCCGGAGATCCTCTACGAGATCGTGCGCCGCGTCGACGCCGCCGAGGAGCTGTGGCCGAACCGCCAGAACGTAGTGTCGTGCGCGTGCGTGTGCAAGCGCTGGCGCGACATCACGCGTGAGGTCGTGCGTGAGCCTTTGCACACCGGGAAAATCACTTTCCCTTCGTGCCTTAAACAGCCCGGACCACGTGAGGTTCCCCACCAATGTCTTATAAAGCGGAACAAGAAGACCTCAACGTTTTATCTATATCTTGCTCTAACACAATCATTCACAGATAAAGGGAAGTTTCTACTAGCAGCTAGGAGATATAGGTGTGGTACCCATACTGAATATATAATTTCCCTCGATGCTGATGATTTATCGCAAGGAAGCAATGCTTATGTTGGAAAGTTAAGCTCGGATTTTCTTGGCACCAACTTCACGATTTATGACAGCCAGCCACCCCATAGTGGTGCAAAACCATCAAGTGGCAGGGCCAGTCGGCGGTTTGCCAGCAAGCAGATAAGCCCGCAGGTTCCTGCTGGTAACTTTGAGGTGGGGCAGGTGTCCTACAAGTTCAACCTGTTGAAATCAAGAGGGCCAAGGAGAATGGTTTGCTCTCTGAAGTCTCCTGTGACTCCTTTCAAAACTACAGGTGAAACTTCAGATAGCACATCTCTTGATGGCCATAAGATGCACGATAAAGAACACGCTGCTTCTGGCCACACAATCTTGAAGAATAAAGCTCCCAGGTGGCATGAGCATTTGCAATGCTGGTGCTTGAATTTCCATGGTCGTGTGACAGTGGCCTCAGTGAAGAACTTTCAGCTGGTTGCAACAGTCGACCAAAGCCAGCCAGGAGGGAAAGGGGATGAGGAAACAGTTCTTCTCCAGTTTGGTAAAGTAGGGGACGATACTTTCACCATGGATTATAGGCAGCCCTTATCTGCTTTCCAGGCTTTTGCCATTTGCTTAACTAGCTTTGGCACTAAACTTGCTTGTGAGTAA 1125 0.5111 MSLRKVFRTRKFSRSFKEAPAVGTAEGGVTGNGVEHAHEDGWSNMLPEILYEIVRRVDAAEELWPNRQNVVSCACVCKRWRDITREVVREPLHTGKITFPSCLKQPGPREVPHQCLIKRNKKTSTFYLYLALTQSFTDKGKFLLAARRYRCGTHTEYIISLDADDLSQGSNAYVGKLSSDFLGTNFTIYDSQPPHSGAKPSSGRASRRFASKQISPQVPAGNFEVGQVSYKFNLLKSRGPRRMVCSLKSPVTPFKTTGETSDSTSLDGHKMHDKEHAASGHTILKNKAPRWHEHLQCWCLNFHGRVTVASVKNFQLVATVDQSQPGGKGDEETVLLQFGKVGDDTFTMDYRQPLSAFQAFAICLTSFGTKLACE 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7970g00001 374 ProSitePatterns Tub family signature 1. 302 315 IPR018066 -
Vium7970g00001 374 PRINTS Tubby superfamily signature 331 350 IPR000007 -
Vium7970g00001 374 PRINTS Tubby superfamily signature 352 374 IPR000007 -
Vium7970g00001 374 PRINTS Tubby superfamily signature 157 173 IPR000007 -
Vium7970g00001 374 PRINTS Tubby superfamily signature 302 318 IPR000007 -
Vium7970g00001 374 PRINTS Tubby superfamily signature 173 197 IPR000007 -
Vium7970g00001 374 PRINTS Tubby superfamily signature 222 249 IPR000007 -
Vium7970g00001 374 PRINTS Tubby superfamily signature 284 301 IPR000007 -
Vium7970g00001 374 SUPERFAMILY Tubby C-terminal domain-like 93 374 IPR025659 -
Vium7970g00001 374 Pfam F-box domain 42 87 IPR001810 GO:0005515
Vium7970g00001 374 Pfam Tub family 103 369 IPR000007 -
Vium7970g00001 374 SUPERFAMILY F-box domain 33 85 IPR036047 GO:0005515
Vium7970g00001 374 PANTHER TUBBY-RELATED 37 372 - -
Vium7970g00001 374 ProSitePatterns Tub family signature 2. 359 374 IPR018066 -
Vium7970g00001 374 Gene3D Tubby Protein; Chain A 98 374 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7970g00001 Vium-Chr7970 2968 7757 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7970g00001 1 374 TUB Transcription Factor Family AT1G53320 71.768 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Vium7970g00001 Tub 1e-102 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7970g00001 K19600 - gmx:100808096 684.485