Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7967g00001 ATGGATTCTGCTTCCTACGTTCCAACTTTCGCAGGAATCTTAGGTTTGCTAATTGCATACAAAGTGTTTAGGTTCATCAGATCTCCTAAACAAAGAAAAGGAACCAAAGTACCCGAACCTCACGGTGCTTTACCTTTGATAGGGCACCTCTACCTTCTCAATGCTAGAATACCCTATTTCAGGACCTTCTCAGCCATGGCTGAGAAATATGGTCCAGTTTTCTGTGTCAAACTGGGTTGCCACCCCACCATAGTGGTGAACAACAGGGAAATTGCCAAAGAGTGCCTCACAACAAATGACAGAATTTTTGCCTCAAGGCCAAACACTTCTGCGGGCAGACTCATGGGTTACAACAATGCAGTCTTTGCCCTTGCCCCGTATGGAAATTACTGGCGTGAGATCAGAAAAATGGCTGTTCTCGAGATTTTGTCAAGCCACAGGCTTGAGAAGCTGAAGCATGTGAGAGACAGTGAAACACTGTCTCTTGTGAAGGACTTGTACTCATCAATGACAGTGTCCTCTGCAAAGAACGTGAAGGGCTCAACTGAAGTGGCTATAAGCAATCTGTTAGAGCACATGACCTTCAACATAATTGTGAGGATGATTGCTGGGAAGAGATTTGGAGGGGACACTTCCAACGATGAAGATAATGAAGCATGGAAGCTGAGAAAGGCCATAAAAGATGCCACATATCTGTCTGGTGTTTTTGTGGTGGCTGATGCAATTCCATCACTCAGTTGGTTTGATTTCCAAGGACATTTAAGTTTCATGAAAAGAACAGCTATGAAACTAGACAGTATTCTTGAGAGATGGCTGCAAGAACACGTGAAAACGAGAGGAGAGATGAAGAATGGTGGATGTGAAAGGGACTTCATGGATGTGATGTTATCATCTTTTGAAGAAGAAAATATTTGTGGCTATAAGCGGGACATCGTTATCAAAGCAACATCATTGATCCTTGTCCTTACTGGCTCTGGAAGCACGGCCATAACCCTAACATGGGCACTCTCCTTACTCCTCAACCACCCCAAGGTTCTAAAGGCAGCCCTACAAGAGTTGGACACCCACGTAGGAAAAGAAAGATGGGTCGAAGAATCTGACATCAAAAACCTCAATTATCTCCATGCCATTATCAAAGAGACCCTTCGTCTGTACCCGCCAGCACCCTTAACAGGAATCAGGGAGGCGACGGAAGATTGCTCTTTGGAAGGGTACCATGTCCCAAAGGGAACACGATTGCTTATTAATCTGTGGAAATTGCAAAGGGAACCAGAAGTATGGCCTAACCCTAATGAGTTTCAGCCAGAGAGGTTCCTCACCACTCACAGAGACATTGATTTTATGAGTCAGGACTTTGAGTTGATTCCATTTAGCATTGGAAGAAGGTCGTGCCCTGGCATGACCTTTGGGCTGCAAGTGACGCACTTGACCTTGGCTCGCTTGCTTCAAGGATTTCATATTTTCACAAAGGATGGTGCTGACGTTGATATGACTGAAGGGTTAGGAGTGGCTTTGCCTAAGGAACAAGAACTTCGACTTATTCTCCAACCTCGTCTTCCATTGGAGCTTTATGAAAGCCTTTGA 1584 0.4476 MDSASYVPTFAGILGLLIAYKVFRFIRSPKQRKGTKVPEPHGALPLIGHLYLLNARIPYFRTFSAMAEKYGPVFCVKLGCHPTIVVNNREIAKECLTTNDRIFASRPNTSAGRLMGYNNAVFALAPYGNYWREIRKMAVLEILSSHRLEKLKHVRDSETLSLVKDLYSSMTVSSAKNVKGSTEVAISNLLEHMTFNIIVRMIAGKRFGGDTSNDEDNEAWKLRKAIKDATYLSGVFVVADAIPSLSWFDFQGHLSFMKRTAMKLDSILERWLQEHVKTRGEMKNGGCERDFMDVMLSSFEEENICGYKRDIVIKATSLILVLTGSGSTAITLTWALSLLLNHPKVLKAALQELDTHVGKERWVEESDIKNLNYLHAIIKETLRLYPPAPLTGIREATEDCSLEGYHVPKGTRLLINLWKLQREPEVWPNPNEFQPERFLTTHRDIDFMSQDFELIPFSIGRRSCPGMTFGLQVTHLTLARLLQGFHIFTKDGADVDMTEGLGVALPKEQELRLILQPRLPLELYESL 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7967g00001 527 FunFam Cytochrome P450 82C4 27 516 - -
Vium7967g00001 527 Pfam Cytochrome P450 38 508 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium7967g00001 527 SUPERFAMILY Cytochrome P450 38 518 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium7967g00001 527 CDD CYP82 71 518 - -
Vium7967g00001 527 PANTHER CYTOCHROME P450 82C3-RELATED 14 524 - -
Vium7967g00001 527 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 457 466 IPR017972 GO:0005506|GO:0016705
Vium7967g00001 527 Gene3D Cytochrome P450 27 518 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium7967g00001 527 PRINTS E-class P450 group I signature 375 393 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium7967g00001 527 PRINTS E-class P450 group I signature 454 464 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium7967g00001 527 PRINTS E-class P450 group I signature 193 211 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium7967g00001 527 PRINTS E-class P450 group I signature 332 358 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium7967g00001 527 PRINTS E-class P450 group I signature 67 86 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium7967g00001 527 PRINTS E-class P450 group I signature 464 487 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium7967g00001 527 PRINTS E-class P450 group I signature 91 112 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium7967g00001 527 PRINTS E-class P450 group I signature 416 440 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium7967g00001 527 PRINTS P450 superfamily signature 323 340 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium7967g00001 527 PRINTS P450 superfamily signature 376 387 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vium7967g00001 527 PRINTS P450 superfamily signature 455 464 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7967g00001 Vium-Chr7967 24293 27553 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7967g00001 38 524 Cytochrome P450 AT4G31940 49.497 2.04e-165 478
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7967g00001 K17961 - gmx:100806378 851.277