Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7966g00001 ATGAAAGGAGAATACGTAGACCAACAACAACATCCTAAGACCGAAACACCACCTCCTATGTTCTCCAAGCTTCAACCTCAACACCATCCTTTCCAACACCACTCCTTCCAACTCTCCGCCGAGGACGACAACCGTGCCCTCGTCGCCACACCCCCTACTGCGCAGAAGCCCAACTCCTCCGGCGGCGACGGTGCCACCATCGAGGTGGTACGGCGTCCCAGGGGCCGTCCTCCCGGCTCCAAGAACAAGCCCAAGCCACCCGTCATCATAACCCGAGACCCTGAACCTGCTATGAGCCCCTACATTTTAGAAGTTTCCGGAGGCAACGACGTCGTCGAGGCCATCGCACAGTTCAGTCGCCGCAAGAATATGGGCATATGTGTCCTCACCGGTTCCGGGACTGTAGCGAGCGTCACTCTCCGTCAACCCTCCACCACACCCGGTGCCACAGTTACTTTTCAGGGCCGTTTCGATATCCTCTCCGTCTCCGCCACCTTCCTTCCGCAGCAATCCGGCGTGTCTCCGGCGGTTCCCAACGGGTTCGCCATCTCGCTCTCTGGACCGCAAGGGCAGATCGTAGGGGGAATGGTCGCCGGCGGGTTGATGGCTGCGGGAACGGTGTTCGTGATCGCGGCTTCTTTCAACAACCCGGCGTATCATAGGCTGCCGCCGGAGGATGAGGGCGCATCCGCCGGCGATGGACATTCGCCGCCAATCTCTGGCGGCGGAGAAAGCGGGCATGGGCAGGCGGAGTCGTGTGGAATGTCCATGTACAGCTGTCACTTGCCTTCCGATGTGATTTGGGCTCCGACGGCCAGAGCACCACCGCCACCACCACCTTACTGA 846 0.6028 MKGEYVDQQQHPKTETPPPMFSKLQPQHHPFQHHSFQLSAEDDNRALVATPPTAQKPNSSGGDGATIEVVRRPRGRPPGSKNKPKPPVIITRDPEPAMSPYILEVSGGNDVVEAIAQFSRRKNMGICVLTGSGTVASVTLRQPSTTPGATVTFQGRFDILSVSATFLPQQSGVSPAVPNGFAISLSGPQGQIVGGMVAGGLMAAGTVFVIAASFNNPAYHRLPPEDEGASAGDGHSPPISGGGESGHGQAESCGMSMYSCHLPSDVIWAPTARAPPPPPPY 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7966g00001 281 MobiDBLite consensus disorder prediction 221 250 - -
Vium7966g00001 281 Pfam Plants and Prokaryotes Conserved (PCC) domain 100 216 IPR005175 -
Vium7966g00001 281 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 44 254 IPR014476 GO:0003680
Vium7966g00001 281 Gene3D - 99 233 - -
Vium7966g00001 281 FunFam AT-hook motif nuclear-localized protein 99 233 - -
Vium7966g00001 281 ProSiteProfiles PPC domain profile profile. 95 235 IPR005175 -
Vium7966g00001 281 MobiDBLite consensus disorder prediction 1 94 - -
Vium7966g00001 281 SUPERFAMILY AF0104/ALDC/Ptd012-like 97 229 - -
Vium7966g00001 281 CDD DUF296 100 214 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7966g00001 Vium-Chr7966 811 2082 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7966g00001 1 277 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 58.276 4.91e-102 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7966g00001 - - gmx:100788098 462.996