Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7958g00003 ATGGAAGGAAGAGAAGGGATGAGTTCTGGGGTTACAGTGATAGGAGCAGAAGCTCCATCAGCCTATCACATGGCACCAAGGAGTGAAGCTCCGAGTCAGGGTGGTCCTCCGGTGCCTGAAGCACCAGCTGCAGCTATTGGTGTGTCACCAGTGAGTGTGGCATTTGATGGAACATCAGTTAAGAAGAAAAGGGGCAGACCAAGAAAATATGGACCAGATGGGTTGGTGAATATGGCATTGTCACCAATGCCAATCTCATCTTCAGCACCATTTTCTAATAACTTTTCATCTGGGAAGCGGGGGAGACCAAAGGGGATGGATTACAAGCTGCCAAAGAAAGTTGGAGTGCATTATCTTGGTGGCTCTGATGGTACAAGCTTTATGCCCCATATCATTACTGTCAATAGTGGCGAGGACATAGCAATGAAGGTCATATCTTTTTCTCAACAAGGACCGCGTGCTATATGCATCTTATCTGCTAGTGGTGTAATTTCAAATGTTACACTTCGTCAGCCTGATTCTTCTGGGGGAACTTTGACCTATGAGGGCCGTTTTGAGATACTTTCCTTGTCTGGATCATTCATGCCTACTGAAAACCAAGGAACAAGAAGCAGGTCTGGAGGAATGAGTGTTTCATTGTCAGGTCCAGATGGTCGTGTTGTAGGTGGTGGAGTGGCTGGTCTACTTGTAGCAGCAGGTCCTGTGCAGGTGGTGGTGGGAAGTTTTTTGCCATGCAGCCAGCAAGATCTGAAGCCAAAGAAGCCAAAGTCTGATCATGCACCTGCTACTGTTACCCCTTCCATTGCAGTGTCTTCTGGACCACCACCCTCTACCAATGGTGGTGAAAAGGAGGTTGTCATGGGTGGACACATACTGCACAACTCAGGAGCAACGCTTAACACAAACCTATCTCCTCCCTCGGCCTTTCGCCGGGAAAACTGGGTTAACATGCACTCGATGACAGACTCAATGAAGTCAGCCACTGATATCAACATATCCTTGCCTGATAGTTAA 1014 0.4773 MEGREGMSSGVTVIGAEAPSAYHMAPRSEAPSQGGPPVPEAPAAAIGVSPVSVAFDGTSVKKKRGRPRKYGPDGLVNMALSPMPISSSAPFSNNFSSGKRGRPKGMDYKLPKKVGVHYLGGSDGTSFMPHIITVNSGEDIAMKVISFSQQGPRAICILSASGVISNVTLRQPDSSGGTLTYEGRFEILSLSGSFMPTENQGTRSRSGGMSVSLSGPDGRVVGGGVAGLLVAAGPVQVVVGSFLPCSQQDLKPKKPKSDHAPATVTPSIAVSSGPPPSTNGGEKEVVMGGHILHNSGATLNTNLSPPSAFRRENWVNMHSMTDSMKSATDINISLPDS 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7958g00003 337 FunFam AT-hook motif nuclear-localized protein 1-like 129 260 - -
Vium7958g00003 337 MobiDBLite consensus disorder prediction 1 43 - -
Vium7958g00003 337 MobiDBLite consensus disorder prediction 264 278 - -
Vium7958g00003 337 Pfam Plants and Prokaryotes Conserved (PCC) domain 129 242 IPR005175 -
Vium7958g00003 337 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 27 311 IPR039605 GO:0003680
Vium7958g00003 337 MobiDBLite consensus disorder prediction 249 281 - -
Vium7958g00003 337 Gene3D - 129 256 - -
Vium7958g00003 337 CDD DUF296 129 219 IPR005175 -
Vium7958g00003 337 ProSiteProfiles PPC domain profile profile. 124 265 IPR005175 -
Vium7958g00003 337 SUPERFAMILY AF0104/ALDC/Ptd012-like 126 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7958g00003 Vium-Chr7958 390 4064 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7958g00003 6 273 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 52.649 3.72e-87 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7958g00003 - - gmx:100777213 530.406