Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7956g00001 ATGGAGTGCAAGAGTGAAGAGCGTATCTCAAAACTCCTTGGAGCTCAAACCCATGTTTGGAATCACATTTTCAGCTTCATAAATTCCATGTCCCTCAAATGTGCAATTGATTTGGACATACCTGACATCATACACAAGCATGGTGAACCCATGCCACTCTCAAAACTCACTGCTTCAGTATCACTCCATCCTTCCAAAGCCAACTGCATCTACCGGTTGATGCGAATCTTGACCCATTCTGGCTTCTTCTCTGAAGTCAAGGTGAATGAGAATGAGCTTGAAGTGGGTTATGTGTTGACTGATGCATGCACTCTATTACTTAAGGACAACCCCTTGAGTATGACACCTTTCTTGCATGCCATGCTTGATCCAATTTTGACAAAGCCGTGGCATGAATTGGCTACATGGTTCAGGAATGATGATCCCTCGCCATTCCACACAGCACATGGGATGAAAATCTGGGACTACGCTGGGCGTGATCCAAGACTGAATCATCTTTTCAATGATGCGATGGCAAGTGACGCTGAATTGGTTGGCAATGTGGTTATTGAGAGGTGTGGGGGAGTGTTCAAGGGGTTGGAGTCACTTGTTGATGTCGGTGGAGGCACAGGTACCATGGCAAAGGCAATTGCCAAATCATTCCCTCACTTAGACTGCACCGTGTTTGATCTCCCACATGTTGTTGCCGACTTACAAGAAGCTGACAACTTAAAATTTGTTGGAGGTGACATGTTTGAGTCAGTTCCTCCTGCAGATGCCGTTCTATTGAAGTGGATATTGCATGACTGGAATGACGAGCAGTGTGTGAGAATACTGAAGAAATGCAAGGAGGGAGTAAAGAGGAAGGTGATTGCGATAGACATGGTGTTGGAGAGTGAAAAGCTTGATTATGAATCAACTGAAACGCAGCTCATGATTGATATGGTTGTCATGGTGTTGTATCCTGGAAAAGAGAGGACCGAGAAAGAATGGGCTAAGATCATTTTCTCTGCTGGTTTCACTGACTACAAGATAACTCCACTGGTGGGTTTGAGGTCTCTCATCGAGATTTATCCCTAA 1059 0.4485 MECKSEERISKLLGAQTHVWNHIFSFINSMSLKCAIDLDIPDIIHKHGEPMPLSKLTASVSLHPSKANCIYRLMRILTHSGFFSEVKVNENELEVGYVLTDACTLLLKDNPLSMTPFLHAMLDPILTKPWHELATWFRNDDPSPFHTAHGMKIWDYAGRDPRLNHLFNDAMASDAELVGNVVIERCGGVFKGLESLVDVGGGTGTMAKAIAKSFPHLDCTVFDLPHVVADLQEADNLKFVGGDMFESVPPADAVLLKWILHDWNDEQCVRILKKCKEGVKRKVIAIDMVLESEKLDYESTETQLMIDMVVMVLYPGKERTEKEWAKIIFSAGFTDYKITPLVGLRSLIEIYP 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7956g00001 352 Pfam O-methyltransferase domain 130 333 IPR001077 GO:0008171
Vium7956g00001 352 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Vium7956g00001 352 Gene3D Vaccinia Virus protein VP39 107 352 IPR029063 -
Vium7956g00001 352 FunFam O-methyltransferase ZRP4 108 352 - -
Vium7956g00001 352 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 352 IPR016461 GO:0008168
Vium7956g00001 352 Gene3D - 2 106 IPR036388 -
Vium7956g00001 352 PANTHER O-METHYLTRANSFERASE 16 337 IPR016461 GO:0008168
Vium7956g00001 352 SUPERFAMILY "Winged helix" DNA-binding domain 10 111 IPR036390 -
Vium7956g00001 352 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 111 350 IPR029063 -
Vium7956g00001 352 PIRSF O-mtase 1 352 IPR016461 GO:0008168
Vium7956g00001 352 FunFam Coniferyl alcohol 9-O-methyltransferase 2 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7956g00001 Vium-Chr7956 18011 19581 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7956g00001 30 338 Monolignol Biosynthesis Gene Families AT5G54160 35.759 7.30e-59 192