Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7949g00002 ATGTCGGTGACTGTGCACACAAACCTAGGTGACATCAAGTGCGAAATCTTCTGCGACGAGATTCCCAAAACCTCCGAGAACTTTTTGGCGCTGTGTGGAAGTGGTTACTATGATGGGACTATATTTCACCGCAACATTAAGGGTTTTATGATTCAAGGTGGAGATCCCACTGGAACTGGCAAAGGGGGAACCTGTATATGGGGCAAGAAATTTAATGATGAGATACGAGAATCACTGAAGCATAATGCAAGGGGAATATTGGCAATGGCTAACAGTGGTCCAAATACTAACGGAAGTCAGTTCTTCATAACTTACGCAAAACAGCCACATTTAAATGGGCTATACACTGTGTTTGGAAGAGTAATTCATGGATTCGAAGTTCTTGATCTCATGGAAAAGGTATTTCATTCTTCCGTAATTATTGTAATTGCTTATTCTCTTTTTAAAAAATTATTTGGTTGA 462 0.3983 MSVTVHTNLGDIKCEIFCDEIPKTSENFLALCGSGYYDGTIFHRNIKGFMIQGGDPTGTGKGGTCIWGKKFNDEIRESLKHNARGILAMANSGPNTNGSQFFITYAKQPHLNGLYTVFGRVIHGFEVLDLMEKVFHSSVIIVIAYSLFKKLFG 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7949g00002 153 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Vium7949g00002 153 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 85 100 IPR002130 GO:0000413|GO:0003755
Vium7949g00002 153 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 100 112 IPR002130 GO:0000413|GO:0003755
Vium7949g00002 153 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Vium7949g00002 153 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 113 128 IPR002130 GO:0000413|GO:0003755
Vium7949g00002 153 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-RELATED 2 134 IPR044666 -
Vium7949g00002 153 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 6 134 IPR002130 GO:0000413|GO:0003755
Vium7949g00002 153 Gene3D - 1 148 IPR029000 -
Vium7949g00002 153 SUPERFAMILY Cyclophilin-like 1 136 IPR029000 -
Vium7949g00002 153 CDD Cyclophilin_PPIL3_like 1 133 - -
Vium7949g00002 153 PIRSF Peptidylpro_ismrse 1 142 IPR024936 GO:0003755
Vium7949g00002 153 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 3 136 IPR002130 GO:0000413|GO:0003755
Vium7949g00002 153 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 37 54 IPR020892 GO:0003755|GO:0006457
Vium7949g00002 153 FunFam Peptidyl-prolyl cis-trans isomerase 1 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7949g00002 Vium-Chr7949 22565 25198 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7949g00002 3 134 U-box Gene Family AT5G67530 56.061 1.42e-47 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7949g00002 K12734 - gmx:100306466 268.47