Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7947g00002 ATGGGGTCACCATTCAGACCAATCTCATGCACCAGAAAAACTCCATACAGAATAGAAACCAGAAACTTGTCATACAAGTTGTGCAGCCAACTTGATGAGTATAGAAGTCTTTGTTTTGGTTCCAGTCCAGGGAGAGGTGCCAAGTTCATTTTGAAGGATGTGAATTGTGAGGCAAGGCCAGGGGAACTGACTGCTATTGCTGGTCCTAGTGGAGCTGGAAAAACCACACTGCTTGAGATTCTTGCAGGGAGAATACCCTCATGTAATAAAGTTTCTGGTCATGTGCTTGTCAATCATAGGCCTATGGATGTGAACTGGTTTAGAAGAACATCAGGGTATGTGACACAAGATGATGCTTTATTCCCTTCACTGACTGTTAGAGAGACACTAATGTATAGTGCCATGCTGAGGCTTCCTGGGGGAAGAAAAGTTGCTGCCGTCAGAGTAGAAGAGTTGATGAAGGAGCTTGGGTTGGACCATATTGCAGATTCAAGAATTGGAGGTGGAACAGACCATGGTATATCCGGAGGAGAAAGACGTAGAGTTTCCATTGGTGTGGACTTGGTTCATGACCCTGCTGTTATTTTGATTGATGAACCAACTTCGGGTTTGGATTCAGCATCAGCTCTTAATGTAGTCGCATTGCTTAGACTTGTGGCGTTTAATCAAGGTAAGACAATTATCTTAACTATCCACCAACCTGGTTTCCGAATCTTAGAGCTGTTTGATGGCCTCGTTTTGCTGGCCGATGGATTTGTGATGCATAATGGATCATTGAATCTTCTTGAAGCTAGACTCAAGTTAGCTGGACACCACATTCCCGACCATGTCAATGTCCTTGAGTTTGCTCTTGATGTCATGGAAAGCTTGGTTATACATACTTCAGAATCTGGGGACAACCAGTTTCTGCTCAAAGAGAACCAAGATCATAAAATGAGAATGCAGCATTCTAAGGTTGTCAAAGTAAAGGCAATTTCATATTCAAATTCTCCTACGAAGGAGATTGCAATCCTGGGACAAAGATTTTGCTGCAACATATTCAGAACCAAGCAATTGTTTGTCACCAGAATCATACAGGCCATAGTAGCTGGCTTTATTCTGGGGAGCATTTTTTTCAATGTTGGCAATCAACAAAGTCATGTAGCATTGCAAACAAGAAGTGGCTTCTTTGCTTTCAGCCTTACCTTTTTGTTATCATCTACAACAGAAGGCTTGCCTATTTTCTTGGAGGAGAGAAGAACTTTTATGAGAGAGACCTCTGGAGGAGCTTATAGAGTTTGTTCCTATGTTTTAGCTAATGCCCTTGTGTTCCTTCCCTTCCTTCTATTGGTTGGTCTTCTGTACTCTACTCCAGTTTATTGGCTTGTAGGGTTAAGGAAAGATATCGATGGTTTCCTTTACTTCTCCTTAGTGGTTTGGTTGGTTCTACTCATGTCCAATTCTCTTGTGGCTTGTTTCAGCGCTCTGGTGCCAAATTTCATCCTGGGAACCTCGGTGATTGCAGGTCTAATGGGGTCTTTCTTTCTATTCTCAGGGTATTTCATATCTGAGGAAAAAATACCAAGTTATTGGATTTTTATGCACTATTTGAGCCTATTCAAGTATCCATTTGAGTGCCTTATGATTAATGAGTACGGTGGGGAGAGAGGGAAGGCGAAGTGCTTAGAAATTAGCAATGGAAAATGCATACTACATGGAGTTGAATTCTTAAGACAACAGGGTCTGAAAGATTCACAAAAATGGAGCAATTTGCCTGTAATGTTGAGTTTCATAGTGGGATACAGAGTGCTTAACTTTTTTATTCTTTGGTTCAGATGCTACAGGACAAGAAAATAG 1836 0.4156 MGSPFRPISCTRKTPYRIETRNLSYKLCSQLDEYRSLCFGSSPGRGAKFILKDVNCEARPGELTAIAGPSGAGKTTLLEILAGRIPSCNKVSGHVLVNHRPMDVNWFRRTSGYVTQDDALFPSLTVRETLMYSAMLRLPGGRKVAAVRVEELMKELGLDHIADSRIGGGTDHGISGGERRRVSIGVDLVHDPAVILIDEPTSGLDSASALNVVALLRLVAFNQGKTIILTIHQPGFRILELFDGLVLLADGFVMHNGSLNLLEARLKLAGHHIPDHVNVLEFALDVMESLVIHTSESGDNQFLLKENQDHKMRMQHSKVVKVKAISYSNSPTKEIAILGQRFCCNIFRTKQLFVTRIIQAIVAGFILGSIFFNVGNQQSHVALQTRSGFFAFSLTFLLSSTTEGLPIFLEERRTFMRETSGGAYRVCSYVLANALVFLPFLLLVGLLYSTPVYWLVGLRKDIDGFLYFSLVVWLVLLMSNSLVACFSALVPNFILGTSVIAGLMGSFFLFSGYFISEEKIPSYWIFMHYLSLFKYPFECLMINEYGGERGKAKCLEISNGKCILHGVEFLRQQGLKDSQKWSNLPVMLSFIVGYRVLNFFILWFRCYRTRK 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7947g00002 611 ProSitePatterns ABC transporters family signature. 174 188 IPR017871 GO:0005524|GO:0016887
Vium7947g00002 611 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 18 275 IPR003439 GO:0005524
Vium7947g00002 611 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 15 596 - -
Vium7947g00002 611 Gene3D - 15 276 IPR027417 -
Vium7947g00002 611 SMART AAA_5 60 252 IPR003593 GO:0016887
Vium7947g00002 611 FunFam ABC transporter G family member 10 35 281 - -
Vium7947g00002 611 Pfam ABC-2 type transporter 232 297 IPR043926 GO:0140359
Vium7947g00002 611 Pfam ABC transporter 51 202 IPR003439 GO:0005524
Vium7947g00002 611 CDD ABCG_EPDR 41 257 - -
Vium7947g00002 611 Pfam ABC-2 type transporter 335 545 IPR013525 GO:0016020|GO:0140359
Vium7947g00002 611 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 46 267 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7947g00002 Vium-Chr7947 12223 14579 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7947g00002 31 262 Calmodulin-binding Proteins AT2G36910 27.869 7.28e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7947g00002 K05681 - gmx:100776372 1097.8