Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7944g00001 ATGGCGCATAACTTTGTTAGTCACTTCTGTAGTGACTTCATCATACAATTTTGTCCTAAGCTCCAACTCACAATAATCTCGNATATAATTGACCCGTCAACAGCTAGAGCACATAATCATGGGAAATCAAAGAATCATACAGGCATAATTGCAGGAGGTGTTGCTGGAGGTGTTGTTTTAGTACTTGTCATTGGGCTATGTGCTTTAGCTGCATCTCGTCGCCGTAGGCAAGGAAAGGATTCTGATGCAAGTGAAGGGCCATCGGGCTGGCTTCCACTTTCTCTTTATGGTCCTTCACACTCTGCAGTTTCTGCCAAGACCAACACAACAGGAAGTTATGCTTCCTCCCTCCCATCAAACCTTTGCCGTCATTTCTCATTTGCTGAAATCAAGTCTGCCACAAACAACTTTGATGAGGCTTTGCTTCTTGGTGTGGGAGGATTCGGTAAGGTTTACAAGGGAGAAATTGATGGTGGAACAACCAAAGTAGCAATTAAACGTGGGAATCCACTGTCTGAGCAGGGGGTGCATGAGTTCCAAACTGAGATTGAAATGCTCTCTAAACTTCGTCACCGCCACCTTGTTTCTCTGATTGGATACTGTGAAGAAAACACTGAAATGATCCTTGTTTATGATTATATGGCCTATGGAACACTCAGGGAGCATTTGTACAAGACCCAGAAACCTCCACTTCCATGGAAGCAAAGGCTTGAGATATGCATTGGAGCTGCTCGGGGTTTACACTATCTACACACTGGAGCTAAACACACAATCATCCACCGTGATGTGAAGACAACAAACATTTTACTGGACGAGAAATGGGTGGCCAAGGTTTCTGATTTTGGATTGTCAAAAACAGGTCCAACATTGGATAATACCCATGTAAGTACTGTGGTAAAGGGTAGCTTTGGGTACTTGGATCCAGAATACTTCAGGAGGCAGCAACTAACTGACAAATCTGATGTTTACTCATTTGGGGTGGTTCTCTTTGAGATATTATGTGCTCGTCCAGCTTTGAACCCAGCCCTTGCTAAGGAGCAAGTGAGTCTGGCTGAGTGGGCAGCTCATTGCTACCTGAAAGGCATTCTTGACCAAATCATTGATCCCTATCTAAAAGGCAAGATAGCTCCAGAATGCTTCAAGAAATTTGCCGAGACTGCGATGAAGTGCGTGGCTGACCAGGGTATTGAAAGGCCATCCATGGGTGATGTCTTGTGGAACCTTGAATTTGCTTTGCAGCTGCAAGAAAGCGCAGAGGAAAGTGGCAACGGCTTTGGCGACATTCACAATGAAGAGGAGCCCACGTATACAGATTCTAAAGGAAAGAAAGACTCTGATGCGATGGGGGGTTATGATGGTAATGTGACTGACTCCAGAAGCAGTGGCATTTCAATGAGCATTGGAGGTAGAAGCTTGGCTAGTGAAGACTCTGATGGGTTAACCCCAAGTGCTGTGTTCTCCCAGATCATGAATCCAAAAGGCCGTTAA 1488 0.4496 MAHNFVSHFCSDFIIQFCPKLQLTIISXIIDPSTARAHNHGKSKNHTGIIAGGVAGGVVLVLVIGLCALAASRRRRQGKDSDASEGPSGWLPLSLYGPSHSAVSAKTNTTGSYASSLPSNLCRHFSFAEIKSATNNFDEALLLGVGGFGKVYKGEIDGGTTKVAIKRGNPLSEQGVHEFQTEIEMLSKLRHRHLVSLIGYCEENTEMILVYDYMAYGTLREHLYKTQKPPLPWKQRLEICIGAARGLHYLHTGAKHTIIHRDVKTTNILLDEKWVAKVSDFGLSKTGPTLDNTHVSTVVKGSFGYLDPEYFRRQQLTDKSDVYSFGVVLFEILCARPALNPALAKEQVSLAEWAAHCYLKGILDQIIDPYLKGKIAPECFKKFAETAMKCVADQGIERPSMGDVLWNLEFALQLQESAEESGNGFGDIHNEEEPTYTDSKGKKDSDAMGGYDGNVTDSRSSGISMSIGGRSLASEDSDGLTPSAVFSQIMNPKGR 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7944g00001 495 MobiDBLite consensus disorder prediction 421 495 - -
Vium7944g00001 495 Gene3D Phosphorylase Kinase; domain 1 99 213 - -
Vium7944g00001 495 CDD STKc_IRAK 143 409 - -
Vium7944g00001 495 Pfam Protein tyrosine and serine/threonine kinase 143 405 IPR001245 GO:0004672|GO:0006468
Vium7944g00001 495 ProSitePatterns Serine/Threonine protein kinases active-site signature. 258 270 IPR008271 GO:0004672|GO:0006468
Vium7944g00001 495 SMART serkin_6 137 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7944g00001 495 SUPERFAMILY Protein kinase-like (PK-like) 110 410 IPR011009 -
Vium7944g00001 495 FunFam Receptor-like protein kinase FERONIA 109 213 - -
Vium7944g00001 495 PANTHER OS07G0166700 PROTEIN 121 415 IPR045272 GO:0004714|GO:0006468
Vium7944g00001 495 ProSitePatterns Protein kinases ATP-binding region signature. 143 166 IPR017441 GO:0005524
Vium7944g00001 495 MobiDBLite consensus disorder prediction 425 447 - -
Vium7944g00001 495 MobiDBLite consensus disorder prediction 454 488 - -
Vium7944g00001 495 Gene3D Transferase(Phosphotransferase) domain 1 214 429 - -
Vium7944g00001 495 ProSiteProfiles Protein kinase domain profile. 137 411 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vium7944g00001 495 FunFam Receptor-like protein kinase FERONIA 214 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7944g00001 Vium-Chr7944 4222 6042 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7944g00001 31 495 Receptor kinase-like Gene Family AT3G51550 82.655 0.0 777
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vium7944g00001 PK_Tyr_Ser-Thr 1.2e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7944g00001 - - vum:124846154 969.148