Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7937g00001 ATGAATTACTTTCAACACTTGCTTGTCTATTGTTGCTTATTATTTTTATGCTTGAAGGTCAGTGAAGCTAGAAGCATGGATAGGGATACTGTGGAGAGTGGATTAACATTTGCGGGTTTTGTGGTATTTAATTGTCCCATAAGATCAGATTCAGCCACTGTTTTATCTGAATTAAAAGAATCTTCACATGACTTGGTGATGATTACCGGTGACCAAGCTTTGACAGCTTGTCATGTTGCTAGCCAAGTTCATATTATATCAAAGCCCACATTAATCCTTGGACCAGCACGAAATGGTGAGGGATATAATTGGATGTCGCCTGATGAGACTGAAAACATTCGCTACAGTGAGAAAGAGGTTGAATCTTTATCAGAGACCCATGATCTCTGTATTGGTGGTGATTGTATTGAGATGTTACAACAGACATCAGCTCATCTGGTGGTCATTCCTCATGTGAAGGTTTTTGCCAGGGTTGCTCCCGAACAAAAAGAACTTATCATGACCACTTTCAAAACAGTTGGACGGTTAACTTTGATGTGTGGGGATGGAACCAATGATGTTGGGGCTTTGAAGCAGGCCCATGTAGGAATCGCTCTTCTAAATGCAATTCCTCCAACTCAAAGTGGAAACTCCTCTTCGGATTCGTCTAAAGAAGAAGGTTCAAAATCTGCTAAGCAAAAGAAATCTAAGTCTGCACTGGACACATCTGGAAAGAGTGCCGGTGAAGGCACTTCCAAAGGCAAAGTTGCTTCAAAATCAGATTCCAGTAGCCACTCTTCTGGTAACCGTCATCAAGCAGCTGTTGAGATGCAACGACAGAAGCTTAAGAAGATGATTGACGAGCTTAATGAGGAAGGAGATGGTCGTGCACCCATTGTGAAGCTTGGTGATGCCTCAATGGCATCTCCATTCACTGCTAAGCATGCATCTGTTGCTCCTACCACTGACATAATTCGCCAAGGTCGGAGTACTCTAGTTACTACCCTCCAGATGTTCAAAATTCTGGGTCTCAATTGTCTTGCTACTGCATATGTGTTGAGTGTTATGTATCTGGATGGTGTGAAGCTAGGTGACGTACAAGCTACAATAAGTGGAGTATTCACTGCTGCATTTTTCCTCTTCATCTCACATGCACGTCCTCTTCCAAGTCTTTCTGCTGAACGTCCTCACCCCAACATCTTCTGTGCTTATGTTTTCCTTTCCCTTTTGGGGCAATTTTCTATTCACCTGCTTTTCCTGATTTCATCTGTGAAAGAAGCTGAAAAATACATGCCAGATGAATGCATTGAACCTGATGCAGATTTTCATCCTAACCTGGTGAATACTGTTTCGTATATGGTGAGCATGATGCTTCAGGTGGCGACATTCGCTGTGAACTATATGGGCCATCCGTTCAACCAGAGTATTTCTGAAAACAGACCGTTCCGGTATGCACTTGTGGCTGCTGTTATTTTCTTTACCGTGATTACATCTGATCTGTTCAGGGAGTTGAATGACTGGTTGAAGTTAGTGCCATTGCCAGTGGGATTAAGGGATAAACTATTGATATGGGCGTTTCTAATGTTTTTGGTTTGCTATTCGTGGGAGAGGCTATTGAGATGGGCCTTCCCTGGTAAGATCCCGGCTTGGAAGCGGCGACAACGGCTTGCTGTATCTAATTTAGATAAGAAACAGGTCTAA 1680 0.4286 MNYFQHLLVYCCLLFLCLKVSEARSMDRDTVESGLTFAGFVVFNCPIRSDSATVLSELKESSHDLVMITGDQALTACHVASQVHIISKPTLILGPARNGEGYNWMSPDETENIRYSEKEVESLSETHDLCIGGDCIEMLQQTSAHLVVIPHVKVFARVAPEQKELIMTTFKTVGRLTLMCGDGTNDVGALKQAHVGIALLNAIPPTQSGNSSSDSSKEEGSKSAKQKKSKSALDTSGKSAGEGTSKGKVASKSDSSSHSSGNRHQAAVEMQRQKLKKMIDELNEEGDGRAPIVKLGDASMASPFTAKHASVAPTTDIIRQGRSTLVTTLQMFKILGLNCLATAYVLSVMYLDGVKLGDVQATISGVFTAAFFLFISHARPLPSLSAERPHPNIFCAYVFLSLLGQFSIHLLFLISSVKEAEKYMPDECIEPDADFHPNLVNTVSYMVSMMLQVATFAVNYMGHPFNQSISENRPFRYALVAAVIFFTVITSDLFRELNDWLKLVPLPVGLRDKLLIWAFLMFLVCYSWERLLRWAFPGKIPAWKRRQRLAVSNLDKKQV 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7937g00001 559 SUPERFAMILY HAD-like 31 204 IPR036412 -
Vium7937g00001 559 ProSitePatterns Hypothetical cof family signature 2. 180 202 - -
Vium7937g00001 559 Gene3D - 35 216 IPR023214 -
Vium7937g00001 559 MobiDBLite consensus disorder prediction 218 232 - -
Vium7937g00001 559 FunFam Cation-transporting ATPase 40 215 - -
Vium7937g00001 559 MobiDBLite consensus disorder prediction 203 270 - -
Vium7937g00001 559 NCBIfam HAD-IC family P-type ATPase 151 199 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vium7937g00001 559 MobiDBLite consensus disorder prediction 233 267 - -
Vium7937g00001 559 SUPERFAMILY Calcium ATPase, transmembrane domain M 321 537 IPR023298 -
Vium7937g00001 559 Coils Coil 265 285 - -
Vium7937g00001 559 PANTHER CATION-TRANSPORTING ATPASE-RELATED 22 536 IPR006544 GO:0006812|GO:0016020|GO:0019829|GO:0140358
Vium7937g00001 559 MobiDBLite consensus disorder prediction 203 217 - -
Vium7937g00001 559 PRINTS P-type cation-transporting ATPase superfamily signature 180 199 - -
Vium7937g00001 559 PRINTS P-type cation-transporting ATPase superfamily signature 61 71 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7937g00001 18 558 Primary Pumps ATPases AT5G23630 75.184 0.0 810
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7937g00001 K14950 - gmx:100789385 979.933