Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7932g00005 ATGAGTAAGCTTCAGAGTGATGCTCTAAGGGAAGCTATCACTGGAATCATGGGTGATTCCAAAGAGAAGAACCGGAATTTTGTGGAGACTATTGAACTCCAAATTGGACTGAAAAACTATGATCCCCAGAAGGACAAGCGTTTCAGTGGCTCTGTTAAATTGCCTCATATTCCTCGCCCCAAGATGAAGATTTGCATGCTTGGAGATGCCCAACACGTTGAGGAGGCAGAGAAGATAGGGTTGGACTACATGGATGTTGAAGCCTTGAAGAAGCTCAACAAAAACAAGAAATTAGTAAAAAAGCTAGCTAAAAAGTATCATGCGTTTTTGGCCTCTGAAGCCGTTATCAAGCAGATTCCTCGTCTCTTGGGACCTGGTCTCAACAAGGCTGGGAAGTTCCCCACACTTGTGACTCACCAAGAATCTCTCGAGTCAAAGGTTAATGAGACTAAGGCTATGGTCAAATTCCAGCTTAAGAAGGTGCTCTGCATGGGAGTAGCCGTGGGGAATGTTAGCATGGAGGAAAAACAAATCTTCCAAAATGTACAACTGAGCGTCAACTTCCTCGTGTCATTGTTGAAAAAGAACTGGCAGAATGTTAGGTGCTTGTACCTGAAGAGTACCATGGGGAAATCATACCGTGTGTTTTAA 651 0.4378 MSKLQSDALREAITGIMGDSKEKNRNFVETIELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDYMDVEALKKLNKNKKLVKKLAKKYHAFLASEAVIKQIPRLLGPGLNKAGKFPTLVTHQESLESKVNETKAMVKFQLKKVLCMGVAVGNVSMEEKQIFQNVQLSVNFLVSLLKKNWQNVRCLYLKSTMGKSYRVF 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7932g00005 216 PIRSF RPL1p_RPL1a_RPL10e_RPL1o 1 216 IPR002143 GO:0003723|GO:0003735|GO:0006412|GO:0015934
Vium7932g00005 216 ProSitePatterns Ribosomal protein L1 signature. 116 135 IPR023673 -
Vium7932g00005 216 FunFam Ribosomal protein 65 154 - -
Vium7932g00005 216 SUPERFAMILY Ribosomal protein L1 22 216 IPR023674 -
Vium7932g00005 216 FunFam Ribosomal protein 137 214 - -
Vium7932g00005 216 Gene3D - 21 211 - -
Vium7932g00005 216 Pfam Ribosomal protein L1p/L10e family 22 210 IPR028364 -
Vium7932g00005 216 CDD Ribosomal_L1 9 215 IPR028364 -
Vium7932g00005 216 FunFam Ribosomal protein L10a 1 119 - -
Vium7932g00005 216 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 12 210 - -
Vium7932g00005 216 Gene3D - 65 154 IPR016095 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7932g00005 Vium-Chr7932 27438 29501 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7932g00005 1 216 Cytoplasmic Ribosomal Protein Gene Family AT1G08360 90.278 1.37e-131 367
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7932g00005 K02865 - gmx:100527698 399.438