Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7932g00002 ATGTACCATCATCACCAACACCAAGGAAAAAACATTCATTCTTCTTCCAGAATGCCAATCCCTTCTGAGAGGCACATGTTCCTTCAAACAGGAAATGGTTCTGGAGATTCTGGACTTGTGCTTTCAACTGATGCTAAGCCAAGATTAAAATGGACAGCAGATCTTCATGCCAGATTTATAGAAGCAGTCAATCAGTTAGGTGGAGCTGACAAAGCAACTCCAAAAACAGTAATGAAACTCATGGGGATTCCAGGGCTTACCTTATATCATTTGAAGAGCCATCTTCAGAAGTATAGATTGAGCAAGAATCTGCATGGACAAAGCAACACCGTGACACACAAAATGACAACAAGTGCAGCAACTGGGGAGAGACTTTCTGAAACCAGTGGAACTCACATGAACAAATTAAGCCTTGGACCGCAGGCTAACAAAGATTTGCATATAAGCGAGGCGCTGCAGATGCAGATTGAGGTGCAGAGAAGGCTCAATGAACAACTTGAGTATCCTGAACCATTTCAGGTACAAAGACACTTGCAGCTTAGGATTGAGGCCCAAGGAAAATACCTTCAGTCTGTGTTGGAGAAAGCTCAGGAGACTCTTGGCAGACAAAATTTGGGAATAGTTGGACTTGAAACTGCCAAAGTTCAACTGTCAGAGCTGGTGTCAAAAGTCTCATCTCAGTGCCTTAACTCAGCATTCTCAGAGCTGAAGGAATTGCAAGGATTTTGCCCTCAGCAAACACACACCAACCAGCCAAACGATTGCTCAGTGGACAGTTGCCTCACATCCTGTGACAGATCACAGAAGGAGCAAGAGATTCAAAATGGCTTTAGACACTTCAACAGCCATATGTTCATGGAACAAAAGGAAGCCACAGAAGCTCCCAACAACCTTAGGAACTGTGAACTCAAGTGGTGTGATGATGGAAAAAAGAACACCTTCCTTGCCCCATTGAGCAGGAATGAAGAAAGAAGAAACTATGCCGCTGAAACCGGTCCTGGCAACTTATCCATGTCCATTGGACTTGAAAGAGAAACAGAAAACAGAAGCAGCATGTATCCTGAAAGGCTAATCACAGAAAACCAATCGGAAGGTGAGTTCCAGCACCGGAACAGAATCAAGACAGAAACAATGAAACCAGTGGATGAAAAAGTTTCTCAAGATTATAGGATGCCAGCTTCTTACTTTGTAGCAGCAAGATTGGACTTAAACAACCATGGAGACAATGAAGCTGCAACCACTTGTAAACAACTGGACTTGAATAGATTCAGTTGGAGCTGA 1281 0.434 MYHHHQHQGKNIHSSSRMPIPSERHMFLQTGNGSGDSGLVLSTDAKPRLKWTADLHARFIEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQSNTVTHKMTTSAATGERLSETSGTHMNKLSLGPQANKDLHISEALQMQIEVQRRLNEQLEYPEPFQVQRHLQLRIEAQGKYLQSVLEKAQETLGRQNLGIVGLETAKVQLSELVSKVSSQCLNSAFSELKELQGFCPQQTHTNQPNDCSVDSCLTSCDRSQKEQEIQNGFRHFNSHMFMEQKEATEAPNNLRNCELKWCDDGKKNTFLAPLSRNEERRNYAAETGPGNLSMSIGLERETENRSSMYPERLITENQSEGEFQHRNRIKTETMKPVDEKVSQDYRMPASYFVAARLDLNNHGDNEAATTCKQLDLNRFSWS 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7932g00002 426 Pfam Myb-like DNA-binding domain 48 99 IPR001005 -
Vium7932g00002 426 NCBIfam myb-like DNA-binding domain, SHAQKYF class 46 101 IPR006447 GO:0003677
Vium7932g00002 426 MobiDBLite consensus disorder prediction 118 138 - -
Vium7932g00002 426 SUPERFAMILY Homeodomain-like 45 101 IPR009057 -
Vium7932g00002 426 Gene3D - 45 103 - -
Vium7932g00002 426 FunFam Myb family transcription factor 45 103 - -
Vium7932g00002 426 MobiDBLite consensus disorder prediction 118 140 - -
Vium7932g00002 426 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 305 IPR044848 GO:0003700
Vium7932g00002 426 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 43 103 IPR017930 -
Vium7932g00002 426 Pfam MYB-CC type transfactor, LHEQLE motif 147 199 IPR025756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7932g00002 Vium-Chr7932 17458 19467 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7932g00002 78 426 G2-like Transcription Factor Family AT3G04030 48.442 1.78e-93 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vium7932g00002 Myb_CC_LHEQLE 4.3e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7932g00002 - - gmx:100810396 773.852