Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vium7927g00001 ATGTCTTCCATTAACAACTCTTTCTTTGTTATAGTTTCTATTCTTTCTCTTTTGGCTTTTTCAAGCAATGCACAACTTTCTCCCTCCTTTTATGCCAGAACTTGCCCCAACCTTCAAACCATAGTGCGCAGTACAATGAGACAAGCCATTGCCAGAGAAGCTAGGCTTGGTGCCTCTATTCTTCGCTTGTTCTTTCATGATTGCTTTGTACAAGGCTGTGATGCATCAATTCTACTGGACGACACTGCAACATTCACAGGAGAGAAAAACGCGTTTCCTAACAGAAATTCAGCGAGGGGCTTCGAAGTTATTGACACCATTAAAACCAACGTTGAAGCTGCTTGCAATGCCACTGTGTCTTGTGCTGATATTCTTGCACTTGCCACAAGAGATGGAGTAGTTCTGCTAGGAGGACCCTCATGGACAGTGCCTCTAGGAAGAAGAGATGCAAGAACAGCAAGTCAGAGTGCAGCCAACAGCCAAATCCCTGGACCTTCCTCAGACCTCTCTACACTGATAACCATGTTTGCAAACAAAGGTCTGACAGCAAGAGACCTAACAGTGCTCTCAGGAGGCCACACAATTGGCCAAGCACAGTGCCAATTCTTCAGAACTCGCATATACAACGAAACCAACATTGATCCTAACTTTGCCACCACAAGAAGGGCCACTTGTCCTGTTTCTGGAGGGAACACTAACCTGGCCCCTCTTGACACCGTCACACCAACCCGTTTTGACAACAATTACTACACTAATCTTGTGAAACAACGTGGCCTTCTCCACTCTGACCAAGTGCTTTTCAATGGTGGCTCTCAAGATGCCCTTGTGAGGACCTACAGTGGCAATTCTGTTGCCTTTTTCAGGGACTTTGCTGCTGCCATGGTGAAGATGGGCAACATTAGTCCTCTCACTGGGACCAATGGAGAGATTAGAAGGAACTGCAGGGTGCTGAATTGA 957 0.4629 MSSINNSFFVIVSILSLLAFSSNAQLSPSFYARTCPNLQTIVRSTMRQAIAREARLGASILRLFFHDCFVQGCDASILLDDTATFTGEKNAFPNRNSARGFEVIDTIKTNVEAACNATVSCADILALATRDGVVLLGGPSWTVPLGRRDARTASQSAANSQIPGPSSDLSTLITMFANKGLTARDLTVLSGGHTIGQAQCQFFRTRIYNETNIDPNFATTRRATCPVSGGNTNLAPLDTVTPTRFDNNYYTNLVKQRGLLHSDQVLFNGGSQDALVRTYSGNSVAFFRDFAAAMVKMGNISPLTGTNGEIRRNCRVLN 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vium7927g00001 318 ProSitePatterns Peroxidases proximal heme-ligand signature. 185 195 IPR019793 -
Vium7927g00001 318 PRINTS Haem peroxidase superfamily signature 238 253 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium7927g00001 318 PRINTS Haem peroxidase superfamily signature 185 200 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium7927g00001 318 PRINTS Haem peroxidase superfamily signature 57 71 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium7927g00001 318 PRINTS Haem peroxidase superfamily signature 137 149 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium7927g00001 318 PRINTS Haem peroxidase superfamily signature 119 136 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium7927g00001 318 PANTHER PEROXIDASE 72-RELATED 23 316 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium7927g00001 318 Gene3D - 30 315 - -
Vium7927g00001 318 SUPERFAMILY Heme-dependent peroxidases 25 318 IPR010255 GO:0004601|GO:0006979|GO:0020037
Vium7927g00001 318 Gene3D Peroxidase, domain 2 163 297 - -
Vium7927g00001 318 Pfam Peroxidase 42 281 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium7927g00001 318 FunFam Peroxidase 163 297 - -
Vium7927g00001 318 ProSitePatterns Peroxidases active site signature. 57 68 IPR019794 GO:0004601
Vium7927g00001 318 ProSiteProfiles Plant heme peroxidase family profile. 25 318 IPR002016 GO:0004601|GO:0006979|GO:0020037
Vium7927g00001 318 PRINTS Plant peroxidase signature 118 128 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium7927g00001 318 PRINTS Plant peroxidase signature 292 305 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium7927g00001 318 PRINTS Plant peroxidase signature 59 79 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium7927g00001 318 PRINTS Plant peroxidase signature 35 54 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium7927g00001 318 PRINTS Plant peroxidase signature 236 251 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium7927g00001 318 PRINTS Plant peroxidase signature 252 269 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium7927g00001 318 PRINTS Plant peroxidase signature 99 112 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium7927g00001 318 PRINTS Plant peroxidase signature 137 152 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium7927g00001 318 PRINTS Plant peroxidase signature 184 196 IPR000823 GO:0004601|GO:0006979|GO:0020037
Vium7927g00001 318 CDD secretory_peroxidase 25 316 IPR033905 GO:0004601|GO:0042744
Vium7927g00001 318 FunFam Peroxidase 29 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vium7927g00001 Vium-Chr7927 67 2294 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vium7927g00001 24 314 Peroxidase AT5G05340 66.212 9.34e-143 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vium7927g00001 K00430 - gmx:100810392 565.074